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1 -Simulate with EBRAINS TVB-multiscale workshop presentation (November 2022)
1 +TheVirtual BrainInClinicalResearchAugust2022
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1 -== [[image:SimulateWithEBRAINS.jpg]] ==
1 +(% class="wikigeneratedid" %)
2 +== [[image:https://www.brainsimulation.org/bsw/img/9687/text_illustration_maxi@2x||alt="Virtual Course Series Summer 2022 Banner"]] ==
2 2  
3 -
4 4  (% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %)
5 -**TVB-Multiscale: Deep Brain Stimulation use case demonstration**
5 +**The Virtual Brain in Clinical Research: An Introduction**.
6 6  
7 7  (% class="wikigeneratedid" %)
8 -November 9th, 2022
8 +Charite, June 28th, 2022 to September 13th, 2022
9 9  
10 10  
11 11  
12 -=== What can I find here? ===
12 +== What can I find here? ==
13 13  
14 -* Presentation slides from the workshop's lecture.
15 -* The notebook demonstrated during the workshop.
14 +* Presentation slides from course's lecture: **Week 7 “The Virtual Brain and multiscale co-simulation” **– Dr. Dionysios Perdikis.
16 16  
17 17  === Guide to run the use-case notebook ===
18 18  
19 -1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
20 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
21 -1. Unzip there SimulateWithEBRAINS.zip by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
22 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation..
18 +1. Run the EBRAINS TVB-NEST development app by browsing to [[https:~~/~~/tvb-nest-dev.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 +1. Navigate to "TVB-NEST-Examples/documented_example_notebooks" folder, and copy paste the WilsonCowan.ipynb notebookt, upwards to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 +1. Run the WilsonCowan.ipynb notebook.
23 23  
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2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf
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1 -XWiki.dionperd
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SimulateWithEBRAINS.jpg
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1 -XWiki.dionperd
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