Last modified by dionperd on 2024/04/08 12:54
From version 28.1
edited by dionperd
on 2022/11/08 16:01
Change comment: Deleted image "SimulateWithEBRAINS.jpg"
To version 22.1
edited by dionperd
on 2022/11/08 15:44
Change comment: Deleted image "SimulateWithEBRAINS.jpg"

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Title
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1 -The Virtual Brain In Clinical Research August 2022
1 +Simulate with EBRAINS TVB-multiscale workshop presentation (November 2022)
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1 1  == [[image:SimulateWithEBRAINS.jpg]] ==
2 2  
3 3  
4 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
4 +(% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %)
5 +**TVB-Multiscale: Deep Brain Stimulation use case demonstration**
5 5  
6 6  (% class="wikigeneratedid" %)
7 7  November 9th, 2022
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11 11  === What can I find here? ===
12 12  
13 13  * Presentation slides from the workshop's lecture.
14 -* The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop.
15 +* The notebook demonstrated during the workshop.
15 15  
16 16  === Guide to run the use-case notebook ===
17 17  
18 18  1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 19  1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
21 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
21 +1. Unzip there SimulateWithEBRAINS.zip by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
22 +1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation..
22 22  
23 23  == ==
SimulateWithEBRAINS.zip
Author
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1 -XWiki.dionperd
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1 -387.5 KB
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