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Summary

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1 -The Virtual Brain In Clinical Research August 2022
1 +TheVirtual BrainInClinicalResearchAugust2022
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1 -== [[image:SimulateWithEBRAINS.jpg]] ==
1 +(% class="wikigeneratedid" %)
2 +== [[image:https://www.brainsimulation.org/bsw/img/9687/text_illustration_maxi@2x||alt="Virtual Course Series Summer 2022 Banner"]] ==
2 2  
4 +(% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %)
5 +**The Virtual Brain in Clinical Research: An Introduction**.
3 3  
4 -== **TVB-Multiscale: Deep Brain Stimulation use case demonstration** ==
5 -
6 6  (% class="wikigeneratedid" %)
7 -November 9th, 2022
8 +Charite, June 28th, 2022 to September 13th, 2022
8 8  
9 9  
10 10  
11 -=== What can I find here? ===
12 +== What can I find here? ==
12 12  
13 -* Presentation slides from the workshop's lecture.
14 -* The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop.
14 +* Presentation slides from course's lecture: [[**Week 7 “The Virtual Brain and multiscale co-simulation” **– Dr. Dionysios Perdikis>>https://www.dropbox.com/s/7qt86f88txp0j9y/2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf?dl=0]].
15 15  
16 16  === Guide to run the use-case notebook ===
17 17  
18 -1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 -1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 -1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
21 -1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
18 +1. Run the EBRAINS TVB-NEST development app by browsing to [[https:~~/~~/tvb-nest-dev.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
19 +1. Navigate to "TVB-NEST-Examples/documented_example_notebooks" folder, and copy paste the WilsonCowan.ipynb notebookt, upwards to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
20 +1. Run the WilsonCowan.ipynb notebook.
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