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  • 2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf

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7	7	August 9th, 2022
8	8
9	9
10		-=== What can I find here? ===
11		-
12		-* Presentation slides from the course's lecture.
13		-* Materials recommended for further study
14		-* Guid to run the notebook TVB-NEST co-simulation demonstrated in the course.
15		-
16		-
17	17	=== Recommendation for self-study ===
18	18
19	19	* [[TVB advanced tutorials>>https://training.incf.org/course/virtual-brain-node-6-workshop]]
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22	22	[[Sanz-Leon, P., Knock, S. A., Spiegler, A., & Jirsa, V. K. (2015). Mathematical framework for large-scale brain network modeling in The Virtual Brain. Neuroimage>>https://www.sciencedirect.com/science/article/pii/S1053811915000051]]
23	23	)))
24	24
25		-=== ===
26	26
	19	+=== What can I find here? ===
27	27
28		-=== Guide to run the course's notebook ===
	21	+* Presentation slides from the course's lecture.
	22	+* The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop.
29	29
30		-1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
31		-1. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the [[WilsonCowan.ipynb notebook>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/INCF%20Neuroinformatics%20Assembly%202022%20training%20workshop.%20Enabling%20multi-scale%20data%20integration%3A%20Turning%20data%20to%20knowledge./WebHome/WilsonCowan.ipynb?rev=1.1]], to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
32		-1. Run the WilsonCowan.ipynb notebook.
33	33
	25	+=== Guide to run the use-case notebook ===
	26	+
	27	+1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
	28	+1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
	29	+1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
	30	+1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
	31	+
34	34	== ==

2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf

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1		-XWiki.dionperd

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1		-14.2 MB

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