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Last modified by dionperd on 2024/04/08 12:54
From version 6.1
edited by dionperd
on 2022/08/05 14:26
Change comment: There is no comment for this version
To version 24.1
edited by dionperd
on 2022/11/08 15:46
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -The Virtual Brain in Clinical Research. An Introduction. (August 2022)
1 +Simulate with EBRAINS TVB-multiscale workshop presentation (November 2022)
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1 -== [[image:https://www.brainsimulation.org/bsw/img/9687/text_illustration_maxi@2x||alt="Virtual Course Series Summer 2022 Banner"]] ==
1 +== [[image:SimulateWithEBRAINS.jpg]] ==
2 2  
3 +
3 3  (% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %)
4 -**The Virtual Brain in Clinical Research: An Introduction**.
5 +**TVB-Multiscale: Deep Brain Stimulation use case demonstration**
5 5  
6 6  (% class="wikigeneratedid" %)
7 -Charite, June 28th, 2022 to September 13th, 2022
8 +November 9th, 2022
8 8  
9 9  
10 10  
11 -== What can I find here? ==
12 +=== What can I find here? ===
12 12  
13 -* Presentation slides from course's lecture: [[**Week 7 “The Virtual Brain and multiscale co-simulation” **– Dr. Dionysios Perdikis>>https://www.dropbox.com/s/7qt86f88txp0j9y/2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf?dl=0]].
14 +* Presentation slides from the workshop's lecture.
15 +* The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop.
14 14  
15 -== Guide to run the use-case notebook ==
17 +=== Guide to run the use-case notebook ===
16 16  
17 -1. Run the EBRAINS TVB-NEST development app by browsing to [[https:~~/~~/tvb-nest-dev.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
18 -1. Navigate to "TVB-NEST-Examples/documented_example_notebooks" folder, and copy paste the WilsonCowan.ipynb notebookt, upwards to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
19 -1. Run the WilsonCowan.ipynb notebook.
19 +1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
20 +1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
21 +1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
22 +1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.
20 20  
21 -== ==
24 +== ==
SimulateWithEBRAINS.zip
Author
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1 +XWiki.dionperd
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1 +387.5 KB
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