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1		-The Virtual Brain in Clinical Research. An Introduction. (August 2022)
	1	+The Virtual Brain In Clinical Research August 2022

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1		-== [[image:https://www.brainsimulation.org/bsw/img/9687/text_illustration_maxi@2x||alt="Virtual Course Series Summer 2022 Banner"]] ==
	1	+== ==
2	2
3		-(% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %)
4		-**The Virtual Brain in Clinical Research: An Introduction**.
	3	+[[image:VirtualBrainClinicalResearch.png]]
5	5
6		-(% class="wikigeneratedid" %)
7		-Charite, June 28th, 2022 to September 13th, 2022
	5	+== **Week 7 “The Virtual Brain and multiscale co-simulation” – Dr. Dionysios Perdikis** ==
8	8
	7	+August 9th, 2022
9	9
10	10
11		-== What can I find here? ==
	10	+=== What can I find here? ===
12	12
13		-* Presentation slides from course's lecture: [[**Week 7 “The Virtual Brain and multiscale co-simulation” **– Dr. Dionysios Perdikis>>https://www.dropbox.com/s/7qt86f88txp0j9y/2022-08-09_TVB-multiscale_SummerVirtualCourse.pdf?dl=0]].
	12	+* Presentation slides from the course's lecture.
	13	+* Materials recommended for further study
	14	+* Guid to run the notebook TVB-NEST co-simulation demonstrated in the course.
14	14
15		-== Guide to run the use-case notebook ==
16	16
17		-1. Run the EBRAINS TVB-NEST development app by browsing to [[https:~~/~~/tvb-nest-dev.apps.hbp.eu/>>url:https://tvb-nest.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
18		-1. Navigate to "TVB-NEST-Examples/documented_example_notebooks" folder, and copy paste the WilsonCowan.ipynb notebookt, upwards to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
	17	+=== Recommendation for self-study ===
	18	+
	19	+* [[TVB advanced tutorials>>https://training.incf.org/course/virtual-brain-node-6-workshop]]
	20	+* [[Schirner, Domide, Perdikis, Triebkorn, Stefanovski, Pai, Prodan, Valean, Palmer, Langford, Blickensdörfer, van der Vlag, Diaz-Pier, Peyser, Woodman, Zehl, Fousek, Petkoski, Kusch, Hashemi, Marinazzo, Mangin, Flöel, Akintoye, Stahl, Deco, McIntosh, Hilgetag, Morgan, Schuller, Upton, McMurtrie, Dickscheid, Bjaalie, Amunts, Mersmann, Jirsa, Ritter (2022). Brain Simulation as a Cloud Service: The Virtual Brain on the European Research Platform EBRAINS. Neuroimage>>https://www.sciencedirect.com/science/article/pii/S1053811922001021]]
	21	+* (((
	22	+[[Sanz-Leon, P., Knock, S. A., Spiegler, A., & Jirsa, V. K. (2015). Mathematical framework for large-scale brain network modeling in The Virtual Brain. Neuroimage>>https://www.sciencedirect.com/science/article/pii/S1053811915000051]]
	23	+)))
	24	+
	25	+=== ===
	26	+
	27	+
	28	+=== Guide to run the course's notebook ===
	29	+
	30	+1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>url:https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
	31	+1. Navigate to "TVB-Multiscale-Examples/documented_example_notebooks" folder, and upload the [[WilsonCowan.ipynb notebook>>path:/bin/download/Collabs/tvb-multiscale-cosim-mcgillsummerschool/INCF%20Neuroinformatics%20Assembly%202022%20training%20workshop.%20Enabling%20multi-scale%20data%20integration%3A%20Turning%20data%20to%20knowledge./WebHome/WilsonCowan.ipynb?rev=1.1]], to the "Contributed-Notebooks" folder, which offers user-specific persistent storage.
19	19	1. Run the WilsonCowan.ipynb notebook.
20	20
21		-== ==
	34	+== ==

VirtualBrainClinicalResearch.png

Author

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	1	+XWiki.dionperd

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	1	+797.2 KB

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