Wiki source code of Simulate with EBRAINS TVB-multiscale workshop presentation (November 2022)
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| 1 | == [[image:SimulateWithEBRAINS.jpg]] == | ||
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| 4 | (% class="wikigeneratedid" id="HTheVirtualBraininClinicalResearch:AnIntroduction.Charite2CA0June28th2C2022toSeptember13th2C2022" %) | ||
| 5 | **TVB-Multiscale: Deep Brain Stimulation use case demonstration** | ||
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| 7 | (% class="wikigeneratedid" %) | ||
| 8 | November 9th, 2022 | ||
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| 12 | === What can I find here? === | ||
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| 14 | * Presentation slides from the workshop's lecture. | ||
| 15 | * The notebook ([[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]]) demonstrated during the workshop. | ||
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| 17 | === Guide to run the use-case notebook === | ||
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| 19 | 1. Run the EBRAINS TVB-Multiscale app by browsing to [[https:~~/~~/tvb-multiscale.apps.hbp.eu/>>https://tvb-multiscale.apps.hbp.eu/]] and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!) | ||
| 20 | 1. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage. | ||
| 21 | 1. Upload and unzip there [[SimulateWithEBRAINS.zip>>attach:SimulateWithEBRAINS.zip]] by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip | ||
| 22 | 1. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation. | ||
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| 24 | == == |