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The Virtual Brain In Clinical Research August 2022

Version 30.1 by dionperd on 2022/11/08 16:45

SimulateWithEBRAINS.jpg

TVB-Multiscale: Deep Brain Stimulation use case demonstration

November 9th, 2022

What can I find here?

  • Presentation slides from the workshop's lecture.
  • The notebook (SimulateWithEBRAINS.zip) demonstrated during the workshop.

Guide to run the use-case notebook

  1. Run the EBRAINS TVB-Multiscale app by browsing to https://tvb-multiscale.apps.hbp.eu/ and logging in with your EBRAINS account. (The first time you log-in, you might need to try several times by refreshing the page, until it works for you!)
  2. Navigate to "Contributed-Notebooks" folder, which offers user-specific persistent storage.
  3. Upload and unzip there SimulateWithEBRAINS.zip by starting a terminal session or a new notebook and running unzip SimulateWithEBRAINS.zip
  4. Run the TVB-corr-cortex-opt.ipynb notebook for TVB-ANNarchy cosimulation and the ANNarchy-spiking-cortex.ipynb one for ANNarchy only simulation.