Changes for page TVB PIPELINE
Last modified by ldomide on 2024/05/20 08:56
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... ... @@ -5,11 +5,6 @@ 5 5 = From MRI to Functional and Structural Connectivity = 6 6 7 7 Neuroimaging data preprocessing pipeline 8 - 9 -(% style="text-align:center" %) 10 -[[image:8d975cf4-13ec-4a6d-9fd9-064bd1fac7b0.jpeg]] 11 - 12 - 13 13 ))) 14 14 ))) 15 15 ... ... @@ -17,7 +17,7 @@ 17 17 ((( 18 18 (% class="col-xs-12 col-sm-8" %) 19 19 ((( 20 -= =What can I find here? ==15 += What can I find here? = 21 21 22 22 * an IPython notebook that describes how to 23 23 ** use the TVB pipeline on one of the associated supercomputers using PyUnicore ... ... @@ -24,16 +24,6 @@ 24 24 ** upload model data to the supercomputer 25 25 ** set up and run the pipeline 26 26 ** download processing results 27 - 28 -== How do I use it? == 29 - 30 -* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter) 31 -* the containers are executed on supercomputers and operated via IPython notebooks 32 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks" 33 -* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]] 34 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there. 35 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]] to edit and run your notebook. 36 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'" 37 37 ))) 38 38 39 39
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