Changes for page TVB PIPELINE

Last modified by ldomide on 2024/05/20 08:56
From version 13.2
edited by michaels
on 2020/05/06 13:40
Change comment: Added tag [tool,CHARITE,Simulation,tvb,visualisation,open source,analysis,supercomputer,brain model,neuroinformatics,image processing,simulation,the virtual brain]
To version 23.1
edited by michaels
on 2020/05/06 15:09
Change comment: There is no comment for this version

Summary

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6 6  
7 7  Neuroimaging data preprocessing pipeline
8 8  
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10 -[[image:8d975cf4-13ec-4a6d-9fd9-064bd1fac7b0.jpeg]]
9 +== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
11 11  
12 -== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||target="_blank"]] ==
11 +== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==
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30 +== ==
13 13  )))
14 14  )))
15 15  
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34 34  * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
35 35  * Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]] to edit and run your notebook.
36 36  * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
55 +
56 +== Metadata ==
57 +
58 +|=Category|tool
59 +|=Tags|(((
60 +* [[Simulaton>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
61 +* [[TVB>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
62 +* [[visualization>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
63 +* [[open-source>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
64 +* [[analysis>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
65 +* [[supercomputers>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
66 +* [[brain-model>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
67 +* [[neuroinformatics>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
68 +* [[image-segmentation>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
69 +* [[simulation>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
70 +* [[The-Virtual-Brain>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
37 37  )))
72 +|=Partners|(((
73 +* Charité Universitätsmedizin Berlin [[CHARITE>>url:https://services.humanbrainproject.eu/software-catalog/catalog/?ctx=97d59245-adce-42c4-8b50-d22587071fcd&ctxstate=search%2Ctvb]]
74 +)))
75 +|=Maintainers|(((
76 +* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
77 +* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
78 +* [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
79 +)))
80 +|=Contributors|(((
81 +* [[Petra Ritter>>path:mailto:petra.ritter@charite.de]]
82 +* [[Michael Schirner>>path:mailto:michael.schirner@charite.de]]
83 +* [[Paul Triebkorn>>path:mailto:jan-paul.triebkorn@charite.de]]
84 +)))
85 +|=Homepage|[[https:~~/~~/www.brainsimulation.org>>url:https://www.brainsimulation.org/]]
86 +|=Documentation|[[https:~~/~~/drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view>>url:https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view]]
87 +|=Support|[[petra.ritter@charite.de>>path:mailto:petra.ritter@charite.de]]
88 +|=Source Code|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
89 +|=Download Page|[[https:~~/~~/hub.docker.com/r/thevirtualbrain/tvb_converter>>url:https://hub.docker.com/r/thevirtualbrain/tvb_converter]]
90 +|=License|GPLv3
91 +|=Current Version|1.0
92 +|=All Versions|(((
93 +* 1.0
94 +)))
38 38  
96 +=== Activities ===
39 39  
98 +== Publications on TVB/brain model preprocessing ==
99 +
100 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/25837600>>url:https://www.ncbi.nlm.nih.gov/pubmed/25837600]]
101 +* [[https:~~/~~/www.ncbi.nlm.nih.gov/pubmed/27480624>>url:https://www.ncbi.nlm.nih.gov/pubmed/27480624]]
102 +)))
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104 +
40 40  (% class="col-xs-12 col-sm-4" %)
41 41  (((
42 42  {{box title="**Contents**"}}
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TVB PIPELINE