Changes for page TVB PIPELINE

Last modified by ldomide on 2024/05/20 08:56
From version 16.1
edited by michaels
on 2020/05/06 13:44
Change comment: There is no comment for this version
To version 1.1
edited by michaels
on 2020/05/04 08:16
Change comment: Collab created through API

Summary

Details

Page properties
Tags
... ... @@ -1,1 +1,0 @@
1 -tool|CHARITE|Simulation|tvb|visualisation|open source|analysis|supercomputer|brain model|neuroinformatics|image processing|the virtual brain
Content
... ... @@ -2,34 +2,9 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= From MRI to Functional and Structural Connectivity =
5 += My Collab's Extended Title =
6 6  
7 -Neuroimaging data preprocessing pipeline
8 -
9 -[[image:8677353.png||style="float:left"]]
10 -
11 -(% class="wikigeneratedid" %)
12 -== ==
13 -
14 -(% class="wikigeneratedid" %)
15 -== ==
16 -
17 -(% class="wikigeneratedid" %)
18 -== ==
19 -
20 -(% class="wikigeneratedid" %)
21 -== ==
22 -
23 -(% class="wikigeneratedid" %)
24 -== ==
25 -
26 -(% class="wikigeneratedid" %)
27 -== ==
28 -
29 -(% class="wikigeneratedid" %)
30 -== ==
31 -
32 -== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
7 +My collab's subtitle
33 33  )))
34 34  )))
35 35  
... ... @@ -37,23 +37,15 @@
37 37  (((
38 38  (% class="col-xs-12 col-sm-8" %)
39 39  (((
40 -== What can I find here? ==
15 += What can I find here? =
41 41  
42 -* an IPython notebook that describes how to
43 -** use the TVB pipeline on one of the associated supercomputers using PyUnicore
44 -** upload model data to the supercomputer
45 -** set up and run the pipeline
46 -** download processing results
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
47 47  
48 -== How do I use it? ==
21 += Who has access? =
49 49  
50 -* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
51 -* the containers are executed on supercomputers and operated via IPython notebooks
52 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
53 -* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]]
54 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
55 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]] to edit and run your notebook.
56 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
23 +Describe the audience of this collab.
57 57  )))
58 58  
59 59  
8677353.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.michaels
Size
... ... @@ -1,1 +1,0 @@
1 -227.9 KB
Content
8d975cf4-13ec-4a6d-9fd9-064bd1fac7b0.jpeg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.michaels
Size
... ... @@ -1,1 +1,0 @@
1 -107.1 KB
Content
XWiki.XWikiRights[0]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -Collabs.tvb-pipeline._.groups.collab-tvb-pipeline-viewer
Levels
... ... @@ -1,1 +1,0 @@
1 -view,comment
XWiki.XWikiRights[1]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -Collabs.tvb-pipeline._.groups.collab-tvb-pipeline-editor
Levels
... ... @@ -1,1 +1,0 @@
1 -view,comment,edit
XWiki.XWikiRights[2]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -Collabs.tvb-pipeline._.groups.collab-tvb-pipeline-administrator
Levels
... ... @@ -1,1 +1,0 @@
1 -view,comment,edit,delete
XWiki.XWikiRights[3]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Levels
... ... @@ -1,1 +1,0 @@
1 -view
Users
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiGuest
XWiki.XWikiRights[4]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiAllGroup
Levels
... ... @@ -1,1 +1,0 @@
1 -view
Public

TVB PIPELINE