Changes for page TVB PIPELINE

Last modified by ldomide on 2024/05/20 08:56
From version 18.1
edited by michaels
on 2020/05/06 13:45
Change comment: There is no comment for this version
To version 3.1
edited by michaels
on 2020/05/04 08:16
Change comment: There is no comment for this version

Summary

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1 -tool|CHARITE|Simulation|tvb|visualisation|open source|analysis|supercomputer|brain model|neuroinformatics|image processing|the virtual brain
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= From MRI to Functional and Structural Connectivity =
5 += My Collab's Extended Title =
6 6  
7 -Neuroimaging data preprocessing pipeline
8 -
9 -== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
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7 +My collab's subtitle
29 29  )))
30 30  )))
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36 -== What can I find here? ==
15 += What can I find here? =
37 37  
38 -* an IPython notebook that describes how to
39 -** use the TVB pipeline on one of the associated supercomputers using PyUnicore
40 -** upload model data to the supercomputer
41 -** set up and run the pipeline
42 -** download processing results
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
43 43  
44 -== How do I use it? ==
21 += Who has access? =
45 45  
46 -* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
47 -* the containers are executed on supercomputers and operated via IPython notebooks
48 -* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
49 -* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]]
50 -* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
51 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]] to edit and run your notebook.
52 -* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
23 +Describe the audience of this collab.
53 53  )))
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TVB PIPELINE