Changes for page TVB PIPELINE
Last modified by ldomide on 2024/05/20 08:56
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... ... @@ -2,12 +2,14 @@ 2 2 ((( 3 3 (% class="container" %) 4 4 ((( 5 -= TVB Image Processing Pipeline = 5 +== TVB Image Processing Pipeline == 6 6 7 -== [[ PipelineVideoTutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer"target="_blank"]] ==7 +=== [[Web-GUI to configure and start processing on HPC>>https://thevirtualbrain.apps.hbp.eu/||target="_blank"]] === 8 8 9 -== [[ Directlinktonotebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==9 +==== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==== 10 10 11 +==== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==== 12 + 11 11 [[image:8677353.png||style="float:left"]] 12 12 13 13 ... ... @@ -46,7 +46,7 @@ 46 46 == How do I use it? == 47 47 48 48 * the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter) 49 -* the containers are executed on supercomputers and operated via IPython notebooks 51 +* the containers are executed on supercomputers and operated via the [[web GUI>>https://thevirtualbrain.apps.hbp.eu/]] or via IPython notebooks 50 50 * Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks" 51 51 * Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]] 52 52 * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.