Attention: The EBRAINS IDM/IAM will be down tomorrow, Wednesday 17nd December, from 17:00 CET for up to 30 minutes for maintenance. Please be aware that this will affect all services that require login or authentication.


Changes for page TVB PIPELINE

Last modified by ldomide on 2024/05/20 08:56

From version 39.1
edited by michaels
on 2021/04/16 21:31
Change comment: There is no comment for this version
To version 40.1
edited by michaels
on 2021/11/30 10:56
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -2,12 +2,14 @@
2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= TVB Image Processing Pipeline =
5 +== TVB Image Processing Pipeline ==
6 6  
7 -== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
7 +=== [[Web-GUI to configure and start processing on HPC>>https://thevirtualbrain.apps.hbp.eu/||target="_blank"]] ===
8 8  
9 -== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==
9 +==== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ====
10 10  
11 +==== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ====
12 +
11 11  [[image:8677353.png||style="float:left"]]
12 12  
13 13  
... ... @@ -46,7 +46,7 @@
46 46  == How do I use it? ==
47 47  
48 48  * the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
49 -* the containers are executed on supercomputers and operated via IPython notebooks
51 +* the containers are executed on supercomputers and operated via the [[web GUI>>https://thevirtualbrain.apps.hbp.eu/]] or via IPython notebooks
50 50  * Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
51 51  * Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]]
52 52  * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
Public

TVB PIPELINE