Changes for page TVB PIPELINE

Last modified by ldomide on 2024/05/20 08:56
From version 40.1
edited by michaels
on 2021/11/30 10:56
Change comment: There is no comment for this version
To version 31.1
edited by michaels
on 2020/06/26 12:00
Change comment: There is no comment for this version

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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -== TVB Image Processing Pipeline ==
5 += TVB Image Processing Pipeline With MINDS annotated Outputs =
6 6  
7 -=== [[Web-GUI to configure and start processing on HPC>>https://thevirtualbrain.apps.hbp.eu/||target="_blank"]] ===
7 +== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
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9 -==== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ====
9 +== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==
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11 -==== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ====
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13 13  [[image:8677353.png||style="float:left"]]
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16 16  )))
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21 21  (% class="col-xs-12 col-sm-8" %)
22 22  (((
23 -== Quick links ==
24 -
25 -* [[TVB on EBRAINS (Short Version)>>https://www.youtube.com/watch?v=EETRdGskiWQ&t=2s||rel="noopener noreferrer" target="_blank"]]
26 -* [[TVB on EBRAINS (Long Version)>>https://www.youtube.com/watch?v=VYhR9RNRIpA&t=2s||rel="noopener noreferrer" target="_blank"]]
27 -* [[TVB on EBRAINS (Mini Videos)>>url:https://www.youtube.com/playlist?list=PLVtblERyzDeLcVv4BbW3BvmO8D-qVZxKf||rel="noopener noreferrer" target="_blank"]]
28 -* [[User Story>>url:https://wiki.ebrains.eu/bin/view/Collabs/user-story-tvb/]]
29 -
30 30  == What can I find here? ==
31 31  
32 32  * an IPython notebook that describes how to
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48 48  == How do I use it? ==
49 49  
50 50  * the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
51 -* the containers are executed on supercomputers and operated via the [[web GUI>>https://thevirtualbrain.apps.hbp.eu/]] or via IPython notebooks
57 +* the containers are executed on supercomputers and operated via IPython notebooks
52 52  * Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
53 53  * Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]]
54 54  * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
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TVB PIPELINE