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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-== TVB Image Processing Pipeline ==
	5	+= TVB Image Processing Pipeline =
6	6
7		-=== [[Web-GUI to configure and start processing on HPC>>https://thevirtualbrain.apps.hbp.eu/||target="_blank"]] ===
	7	+== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ==
8	8
9		-==== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ====
	9	+== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ==
10	10
11		-==== [[Direct link to notebook>>https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks||rel="noopener noreferrer" target="_blank"]] ====
12		-
13	13	[[image:8677353.png||style="float:left"]]
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48	48	== How do I use it? ==
49	49
50	50	* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
51		-* the containers are executed on supercomputers and operated via the [[web GUI>>https://thevirtualbrain.apps.hbp.eu/]] or via IPython notebooks
	49	+* the containers are executed on supercomputers and operated via IPython notebooks
52	52	* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
53	53	* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]]
54	54	* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.