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1		-XWiki.ldomide
	1	+XWiki.michaels

Content

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4	4	(((
5	5	== TVB Image Processing Pipeline ==
6	6
	7	+=== [[Web-GUI to configure and start processing on HPC>>https://thevirtualbrain.apps.hbp.eu/||rel="noopener noreferrer" target="_blank"]] ===
	8	+
7	7	==== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||rel="noopener noreferrer" target="_blank"]] ====
8	8
9	9	==== [[Direct link to notebook>>https://drive.ebrains.eu/d/5e2fbc74575c47e88780/||rel="noopener noreferrer" target="_blank"]] ====
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20	20	(((
21	21	== Quick links ==
22	22
	25	+* [[TVB Pipeline Web GUI>>https://thevirtualbrain.apps.hbp.eu/]]
23	23	* [[TVB on EBRAINS (Short Version)>>https://www.youtube.com/watch?v=EETRdGskiWQ&t=2s||rel="noopener noreferrer" target="_blank"]]
24	24	* [[TVB on EBRAINS (Long Version)>>https://www.youtube.com/watch?v=VYhR9RNRIpA&t=2s||rel="noopener noreferrer" target="_blank"]]
25	25	* [[TVB on EBRAINS (Mini Videos)>>url:https://www.youtube.com/playlist?list=PLVtblERyzDeLcVv4BbW3BvmO8D-qVZxKf||rel="noopener noreferrer" target="_blank"]]
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27	27
28	28	== What can I find here? ==
29	29
	33	+* a [[link>>https://thevirtualbrain.apps.hbp.eu/]] to the Web App for using the pipeline via GUI
30	30	* the code underlying the pipeline including the orchestrator that manages processing on the supercomputer
31	31	* an IPython notebook that describes how to
32	32	** use the TVB processing pipeline on one of the associated supercomputers using PyUnicore
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47	47	== How do I use it? ==
48	48
49	49	* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
50		-* the containers can be executed on supercomputers and operated via IPython notebooks
	54	+* the containers are executed on supercomputers and operated via the [[web GUI>>https://thevirtualbrain.apps.hbp.eu/]] or via IPython notebooks
51	51	* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
52	52	* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/d/5e2fbc74575c47e88780/>>https://drive.ebrains.eu/d/5e2fbc74575c47e88780/]]
53	53	* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.