Changes for page TVB PIPELINE
Last modified by ldomide on 2024/05/20 08:56
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... ... @@ -12,7 +12,7 @@ 12 12 ((( 13 13 (% class="col-xs-12 col-sm-8" %) 14 14 ((( 15 -= What can I find here? = 15 +== What can I find here? == 16 16 17 17 * an IPython notebook that describes how to 18 18 ** use the TVB pipeline on one of the associated supercomputers using PyUnicore ... ... @@ -19,6 +19,16 @@ 19 19 ** upload model data to the supercomputer 20 20 ** set up and run the pipeline 21 21 ** download processing results 22 + 23 + 24 +== How do I use it? == 25 + 26 +* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter) 27 +* the containers are executed on supercomputers and operated via IPython notebooks 28 +* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks" 29 +* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there. 30 +* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook. 31 +* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'" 22 22 ))) 23 23 24 24