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2	2	(((
3	3	(% class="container" %)
4	4	(((
5		-= From MRI to Functional and Structural Connectivity =
	5	+= My Collab's Extended Title =
6	6
7		-Neuroimaging data preprocessing pipeline
	7	+My collab's subtitle
8	8	)))
9	9	)))
10	10
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12	12	(((
13	13	(% class="col-xs-12 col-sm-8" %)
14	14	(((
15		-== What can I find here? ==
	15	+= What can I find here? =
16	16
17		-* an IPython notebook that describes how to
18		-** use the TVB pipeline on one of the associated supercomputers using PyUnicore
19		-** upload model data to the supercomputer
20		-** set up and run the pipeline
21		-** download processing results
	17	+* Notice how the table of contents on the right
	18	+* is automatically updated
	19	+* to hold this page's headers
22	22
	21	+= Who has access? =
23	23
24		-== How do I use it? ==
25		-
26		-* the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter)
27		-* the containers are executed on supercomputers and operated via IPython notebooks
28		-* Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks"
29		-* To use the notebook, download it onto your local filesystem, create a new Collab and upload it there.
30		-* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/]] to edit and run your notebook.
31		-* Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'"
	23	+Describe the audience of this collab.
32	32	)))
33	33
34	34

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