Changes for page TVB PIPELINE
Last modified by ldomide on 2024/05/20 08:56
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... ... @@ -1,0 +1,1 @@ 1 +tool|CHARITE|Simulation|tvb|visualisation|open source|analysis|supercomputer|brain model|neuroinformatics|image processing|the virtual brain - Content
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... ... @@ -5,6 +5,11 @@ 5 5 = From MRI to Functional and Structural Connectivity = 6 6 7 7 Neuroimaging data preprocessing pipeline 8 + 9 +(% style="text-align:center" %) 10 +[[image:8d975cf4-13ec-4a6d-9fd9-064bd1fac7b0.jpeg]] 11 + 12 +== [[Pipeline Video Tutorial>>https://drive.google.com/file/d/1VcXf3GX3KoihF4UzJQXzuGL4XWoqj5Jr/view||target="_blank"]] == 8 8 ))) 9 9 ))) 10 10 ... ... @@ -25,8 +25,9 @@ 25 25 * the pipeline is implemented by three Docker containers (mrtrix3_connectome, fmriprep and tvb_converter) 26 26 * the containers are executed on supercomputers and operated via IPython notebooks 27 27 * Find the notebook by clicking on "Drive" in the left menu. The notebook is located in the folder "notebooks" 33 +* Direct link to notebook: [[https:~~/~~/drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks>>url:https://drive.ebrains.eu/#my-libs/lib/42ac27a5-981e-4cf6-8ec5-d67b0c24bf09/notebooks]] 28 28 * To use the notebook, download it onto your local filesystem, create a new Collab and upload it there. 29 -* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel=" 35 +* Then, head over to [[https:~~/~~/lab.ebrains.eu/>>url:https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]] to edit and run your notebook. 30 30 * Depending on whether you created a public or a private notebook it will be accessible in either "drive/Shared with all" or "drive/Shared with groups'" 31 31 ))) 32 32
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