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Changes for page TVB Widgets

Last modified by paulapopa on 2025/07/10 09:45
From version 21.1
edited by ldomide
on 2023/03/14 11:50
Change comment: There is no comment for this version
To version 27.1
edited by paulapopa
on 2025/07/10 09:43
Change comment: There is no comment for this version

Summary

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1 -XWiki.ldomide
1 +XWiki.paulapopa
Content
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4 4  (((
5 5  = TVB inspired GUI Widgets =
6 6  
7 -//from [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>https://github.com/the-virtual-brain/tvb-widgets]] , //[[https:~~/~~/github.com/the-virtual-brain/tvb-ext-bucket>>https://github.com/the-virtual-brain/tvb-ext-bucket]],// //[[https:~~/~~/github.com/the-virtual-brain/tvb-ext-xircuits>>https://github.com/the-virtual-brain/tvb-ext-xircuits]]//and [[https:~~/~~/github.com/the-virtual-brain/tvb-ext-unicore>>https://github.com/the-virtual-brain/tvb-ext-unicore]]//
7 +//code in [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>https://github.com/the-virtual-brain/tvb-widgets]] , //[[https:~~/~~/github.com/the-virtual-brain/tvb-ext-bucket>>https://github.com/the-virtual-brain/tvb-ext-bucket]],// //[[https:~~/~~/github.com/the-virtual-brain/tvb-ext-xircuits>>https://github.com/the-virtual-brain/tvb-ext-xircuits]]//and [[https:~~/~~/github.com/the-virtual-brain/tvb-ext-unicore>>https://github.com/the-virtual-brain/tvb-ext-unicore]]//
8 8  
9 9  **for EBRAINS showcases**
10 10  )))
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18 18  
19 19  * Description of TVB GUI Widgets
20 20  * Installation and usage guidance
21 -* Basic examples
21 +* Basic usage examples
22 22  
23 23  === Authors ===
24 24  
25 -* (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**SDL Neuroscience Juelich**: Sandra Diaz
26 -* (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**INS Marseille**: Jan Fousek
27 -* [[(% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**Codemart**>>https://www.codemart.ro/codemart/zwei/||target="_blank"]]: Paula Prodan, David Bacter, Romina Baila, Jochen Mersmann, Lia Domide
25 +* (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**SDL Neuroscience Juelich**: Sandra Diaz (lead)
26 +* (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**INS Marseille**: Jan Fousek (PO)
27 +* [[(% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)**Codemart**>>https://www.codemart.ro/codemart/zwei/||rel="noopener noreferrer" target="_blank"]](%%): Paula Prodan, David Bacter, Romina Baila, Teodora Misan, Rares Horge, Jochen Mersmann, Lia Domide (technical team)
28 28  
29 29  === Concepts ===
30 30  
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35 35  * (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)KG integration
36 36  * (% style="color:#595959; font-family:Arial; font-size:14pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)GUI workflow editing
37 37  
38 -(% class="western" id="HMOTIVATION" lang="en-AU" style="border: none; padding: 0in;" %)
38 +(% id="HMOTIVATION" lang="en-AU" style="border: none; padding: 0in;" class="western" %)
39 39  == (% style="line-height:150%" %)**MOTIVATION**(%%) ==
40 40  
41 41  (% class="western" lang="en-AU" style="border:none; padding:0in" %)
42 -(% style="line-height:150%" %)The showcases developed in the last phase of the HBP are meant to illustrate the full potential of technical and scientific features offered by EBRAINS. In order to support the usability of the showcases, as well as future EBRAINS workflows, we have developed a set of modular graphic components and software solutions, which can be easily deployed or replicated in the EBRAINS Collaboratory within the [[JupyterLab>>https://lab.ebrains.eu/||target="_blank"]].
42 +(% style="line-height:150%" %)The showcases developed in the last phase of the HBP are meant to illustrate the full potential of technical and scientific features offered by EBRAINS. In order to support the usability of the showcases, as well as future EBRAINS workflows, we have developed a set of modular graphic components and software solutions, which can be easily deployed or replicated in the EBRAINS Collaboratory within the [[JupyterLab>>https://lab.ebrains.eu/||rel="noopener noreferrer" target="_blank"]].
43 43  
44 44  (% class="western" lang="en-AU" style="border:none; padding:0in" %)
45 45  (% style="line-height:150%" %)These graphical user interfaces (GUI) components are all based on and under open source licences, supporting open neuroscience and they enable features like:
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46 46  
47 47  * (% style="line-height:150%" %)Easy setup of models and region specific or cohort simulations
48 48  * (% style="line-height:150%" %)Selection of Data sources and their links to models.
49 -* (% style="line-height:150%" %)Querying data from [[Siibra>>https://siibra-python.readthedocs.io/en/latest/||target="_blank"]] and the Knowledge Graph.
49 +* (% style="line-height:150%" %)Querying data from [[Siibra>>https://siibra-python.readthedocs.io/en/latest/||rel="noopener noreferrer" target="_blank"]] and the Knowledge Graph.
50 50  * (% style="line-height:150%" %)Deployment and monitoring jobs on HPC resources.
51 51  * (% style="line-height:150%" %)Integration of a subset of [[the virtual brain>>https://www.thevirtualbrain.org/tvb/zwei||rel="noopener noreferrer" target="_blank"]] analysis and visualisation tools.
52 52  
53 -(% class="western" id="HMETHODS" lang="en-AU" style="border: none; padding: 0in;" %)
53 +{{html}}
54 +<iframe width="800" height="400" src="https://www.youtube.com/embed/NXtyiQZIdBE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
55 +{{/html}}
56 +
57 +(% id="HMETHODS" lang="en-AU" style="border: none; padding: 0in;" class="western" %)
54 54  == METHODS ==
55 55  
56 56  (% class="western" lang="en-AU" style="border:none; padding:0in" %)
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65 65  (% class="western" lang="en-GB" style="border:none; padding:0in" %)
66 66  [[image:image-20230314124213-1.png]]
67 67  
68 -
72 +Overview of widgets and technologies:
73 +
74 +[[image:technologies.png]]
69 69  )))
70 70  
71 71  
78 +
72 72  (% class="col-xs-12 col-sm-4" %)
73 73  (((
74 74  {{box title="**Contents**"}}
technologies.png
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TVB Widgets