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Author

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1		-XWiki.rominabaila
	1	+XWiki.ldomide

Content

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1	1	Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-ext-xircuits>>https://github.com/the-virtual-brain/tvb-ext-xircuits]]
2	2
	3	+Release on Pypi: [[https:~~/~~/pypi.org/project/tvb-ext-xircuits/>>https://pypi.org/project/tvb-ext-xircuits/]]
	4	+
3	3	== Jupyter Lab Extension for building and executing EBRAINS Workflows ==
4	4
5	5	== Purpose ==
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86	86
87	87	== Workflow examples ==
88	88
89		-=== A TVB simulation workflow ===
	91	+(((
	92	+=== 1. Full TVB Simulation workflow ===
	93	+)))
90	90
91		-(% style="text-align:center" %)
92		-[[image:image-20221116162514-1.png||height="800" width="1456"]]
	95	+Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
93	93
94		-{{html}}<iframe src="https://drive.google.com/file/d/1wZ1EWSPUAI2NgGzrQiUZHL-kLEydZ4RC/preview" width="840" height="480" allow="autoplay"></iframe>{{/html}}
	97	+{{html}}
	98	+<iframe src="https://drive.google.com/file/d/14sVjWXmtfZB-Zt7i3MA26-MiNWwv3jZI/preview" width="1280" height="720" allow="autoplay"></iframe>
	99	+{{/html}}
	100	+
	101	+
	102	+=== 2. Configuring model parameters using the PhasePlaneWidget: ===
	103	+
	104	+Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
	105	+
	106	+{{html}}
	107	+<iframe src="https://drive.google.com/file/d/1Puoi4-Ej4BhVwtdRzciPD_qNKMF0HvGT/preview" width="1280" height="720" allow="autoplay"></iframe>
	108	+{{/html}}
	109	+
	110	+
	111	+=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
	112	+
	113	+A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
	114	+
	115	+{{html}}
	116	+<iframe src="https://drive.google.com/file/d/1bakH6ZD96eMHnYSw1aasF_gNXt8sBS7D/preview" width="1280" height="720" allow="autoplay"></iframe>
	117	+{{/html}}
	118	+
	119	+
	120	+=== 4. Run a workflow inside an HPB job ===
	121	+
	122	+A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
	123	+
	124	+{{html}}<iframe src="https://drive.google.com/file/d/1rvcj_9lGtR069iXlL3Rm1czMNdA3qmGM/preview" width="1280" height="720" allow="autoplay"></iframe>{{/html}}
95	95