Last modified by paulapopa on 2023/03/24 08:17
From version 28.1
edited by ldomide
on 2023/02/15 12:20
Change comment: There is no comment for this version
To version 21.1
edited by rominabaila
on 2022/11/16 12:05
Change comment: There is no comment for this version

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1 -XWiki.ldomide
1 +XWiki.rominabaila
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1 1  Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-ext-xircuits>>https://github.com/the-virtual-brain/tvb-ext-xircuits]]
2 2  
3 -Release on Pypi: [[https:~~/~~/pypi.org/project/tvb-ext-xircuits/>>https://pypi.org/project/tvb-ext-xircuits/]]
4 -
5 5  == Jupyter Lab Extension for building and executing EBRAINS Workflows ==
6 6  
7 7  == Purpose ==
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88 88  
89 89  == Workflow examples ==
90 90  
91 -(((
92 -=== 1. Full TVB Simulation workflow ===
93 -)))
94 94  
95 -Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
96 -
97 -{{html}}
98 -<iframe src="https://drive.google.com/file/d/14sVjWXmtfZB-Zt7i3MA26-MiNWwv3jZI/preview" width="1280" height="720" allow="autoplay"></iframe>
99 -{{/html}}
100 -
101 -
102 -=== 2. Configuring model parameters using the PhasePlaneWidget: ===
103 -
104 -Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
105 -
106 -{{html}}
107 -<iframe src="https://drive.google.com/file/d/1Puoi4-Ej4BhVwtdRzciPD_qNKMF0HvGT/preview" width="1280" height="720" allow="autoplay"></iframe>
108 -{{/html}}
109 -
110 -
111 -=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
112 -
113 -A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
114 -
115 -{{html}}
116 -<iframe src="https://drive.google.com/file/d/1bakH6ZD96eMHnYSw1aasF_gNXt8sBS7D/preview" width="1280" height="720" allow="autoplay"></iframe>
117 -{{/html}}
118 -
119 -
120 -=== 4. Run a workflow inside an HPB job ===
121 -
122 -A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
123 -
124 -{{html}}<iframe src="https://drive.google.com/file/d/1rvcj_9lGtR069iXlL3Rm1czMNdA3qmGM/preview" width="1280" height="720" allow="autoplay"></iframe>{{/html}}
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2022-11-16 14-05-53.mp4
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1 -XWiki.rominabaila
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image-20221116162514-1.png
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Content
Public

TVB Widgets