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Author

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1		-XWiki.paulapopa
	1	+XWiki.rominabaila

Content

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1	1	Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-ext-xircuits>>https://github.com/the-virtual-brain/tvb-ext-xircuits]]
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3		-Release on Pypi: [[https:~~/~~/pypi.org/project/tvb-ext-xircuits/>>https://pypi.org/project/tvb-ext-xircuits/]]
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5	5	== Jupyter Lab Extension for building and executing EBRAINS Workflows ==
6	6
7	7	== Purpose ==
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27	27	After installing the extension and opening a Jupyter Lab session, you should be able to see in the left panel of Jupyter Lab a new icon, which represents the Xircuits components tray:
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	27	+[[image:image-20221116115659-2.png]]
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31		-
32	32	== **Usage** ==
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34	34	=== **Step 1. Create a new Xircuits workflow** ===
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96	96	Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
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98	98	{{html}}
99		-<iframe src="https://drive.google.com/file/d/14sVjWXmtfZB-Zt7i3MA26-MiNWwv3jZI/preview" width="1280" height="720" allow="autoplay"></iframe>
	96	+<iframe src="https://drive.google.com/file/d/14sVjWXmtfZB-Zt7i3MA26-MiNWwv3jZI/preview" width="1920" height="1080" allow="autoplay"></iframe>
100	100	{{/html}}
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105	105	Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
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107	107	{{html}}
108		-<iframe src="https://drive.google.com/file/d/1Puoi4-Ej4BhVwtdRzciPD_qNKMF0HvGT/preview" width="1280" height="720" allow="autoplay"></iframe>
	105	+<iframe src="https://drive.google.com/file/d/1Puoi4-Ej4BhVwtdRzciPD_qNKMF0HvGT/preview" width="1920" height="1080" allow="autoplay"></iframe>
109	109	{{/html}}
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114	114	A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
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116	116	{{html}}
117		-<iframe src="https://drive.google.com/file/d/1bakH6ZD96eMHnYSw1aasF_gNXt8sBS7D/preview" width="1280" height="720" allow="autoplay"></iframe>
	114	+<iframe src="https://drive.google.com/file/d/1bakH6ZD96eMHnYSw1aasF_gNXt8sBS7D/preview" width="1920" height="1080" allow="autoplay"></iframe>
118	118	{{/html}}
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123	123	A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
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125		-{{html}}<iframe src="https://drive.google.com/file/d/1rvcj_9lGtR069iXlL3Rm1czMNdA3qmGM/preview" width="1280" height="720" allow="autoplay"></iframe>{{/html}}
	122	+{{html}}<iframe src="https://drive.google.com/file/d/1rvcj_9lGtR069iXlL3Rm1czMNdA3qmGM/preview" width="1920" height="1080" allow="autoplay"></iframe>{{/html}}
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1		-XWiki.paulapopa

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1		-3.8 KB

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