Last modified by teodoramisan on 2026/02/13 10:11
From version 68.1
edited by teodoramisan
on 2026/02/12 11:30
Change comment: There is no comment for this version
To version 72.1
edited by teodoramisan
on 2026/02/12 12:07
Change comment: There is no comment for this version

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142 142  [[image:export-model-configuration.png||alt="image-20221116130425-1.png" data-xwiki-image-style-alignment="center" height="763" width="1000"]]
143 143  
144 144  
145 -=== 2. Visualize time series resulted from simulations ===
145 +=== 2. Visualize time series resulted from TVB simulations ===
146 146  
147 147  This functionality is available for the **StoreResultsToDrive** component. Right click on the **StoreResultsToDrive** and select the **Open Viewer** option:
148 148  
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164 164  === 1. Full TVB Simulation workflow ===
165 165  )))
166 166  
167 -Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
167 +Contains all TVB components necessary for running a TVB simulation (e.g., connectivity, coupling, model, integrator, monitor, simulator).
168 168  
169 169  {{html}}
170 170  <iframe width="1280" height="720" src="https://www.youtube.com/embed/bmqPlIJsWLk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
171 171  {{/html}}
172 172  
173 +=== 2. Full VBI Inference workflow ===
173 173  
174 -=== 2. Configuring model parameters using the PhasePlaneWidget: ===
175 +Contains all VBI components required to run an inference workflow (e.g., inference configuration, model, simulator, train posterior, sample posterior).
175 175  
177 +[[image:vbi_workflow.png||height="590" width="1100"]]
178 +
179 +=== 3. Configuring model parameters using the PhasePlaneWidget: ===
180 +
176 176  Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
177 177  
178 178  {{html}}
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179 179  <iframe width="1280" height="720" src="https://www.youtube.com/embed/jhGfYul1z9k" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
180 180  {{/html}}
181 181  
187 +=== 4. Using siibra to retrieve connectivities from the EBRAINS KG ===
182 182  
183 -=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
184 -
185 185  A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
186 186  
187 187  {{html}}
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188 188  <iframe width="1280" height="720" src="https://www.youtube.com/embed/hnqTpFGCYMg" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
189 189  {{/html}}
190 190  
195 +=== 5. Run a workflow as an HPB job ===
191 191  
192 -=== 4. Run a workflow as an HPB job ===
193 -
194 194  A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
195 195  
196 196  {{html}}<iframe width="1280" height="720" src="https://www.youtube.com/embed/M6rZClFgRrM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>{{/html}}
vbi_workflow.png
Author
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1 +XWiki.teodoramisan
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1 +465.2 KB
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TVB Widgets