Last modified by teodoramisan on 2026/02/13 10:11
From version 69.1
edited by teodoramisan
on 2026/02/12 11:50
Change comment: There is no comment for this version
To version 67.1
edited by teodoramisan
on 2026/02/12 11:27
Change comment: There is no comment for this version

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61 61  
62 62  The components that are provided in this extensions are configurable, meaning you can set some parameters on almost every component. Some of the parameters are literals, while some parameters are results of other components.
63 63  
64 -Parameters marked with a star (★) are mandatory, the workflow will not run until all required parameters have values assigned.
64 +Parameters marked with a star (*) are mandatory, the workflow will not run until all required parameters have values assigned.
65 65  
66 66  In case of primitives you need to open the //General// tab from the components tray and drag the appropriate //literal//: float, int, string, dict, etc.
67 67  
68 68  The parameters need to be linked to the inputs of the component by dragging and dropping a connection from the output port of a literal/component towards the corresponding input port of the other component (e.g. the gray connections in the screenshot below).
69 69  
70 -Components and parameters include info buttons (**i**) that explain their purpose and how they are used (e.g. the simulator info panel below).
70 +Components and parameters include info buttons (i) that explain their purpose and how they are used (e.g. the simulator info panel below).
71 71  
72 72  [[image:Screenshot 2026-02-12 115445.png||alt="diagr.png" height="592" width="1100"]]
73 73  
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164 164  === 1. Full TVB Simulation workflow ===
165 165  )))
166 166  
167 -Contains all TVB components necessary for running a TVB simulation (e.g., connectivity, coupling, model, integrator, monitor, simulator).
167 +Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
168 168  
169 169  {{html}}
170 170  <iframe width="1280" height="720" src="https://www.youtube.com/embed/bmqPlIJsWLk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
171 171  {{/html}}
172 172  
173 -=== 2. Full VBI Inference workflow ===
174 174  
175 -Contains all VBI components required to run an inference workflow (e.g., inference configuration, model, simulator, train posterior, sample posterior).
174 +=== 2. Configuring model parameters using the PhasePlaneWidget: ===
176 176  
177 -[[image:vbi_workflow.png||height="590" width="1100"]]
178 -
179 -(% class="wikigeneratedid" %)
180 -{{{ }}}
181 -
182 -
183 -=== 3. Configuring model parameters using the PhasePlaneWidget: ===
184 -
185 185  Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
186 186  
187 187  {{html}}
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189 189  {{/html}}
190 190  
191 191  
192 -=== 4. Using siibra to retrieve connectivities from the EBRAINS KG ===
183 +=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
193 193  
194 194  A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
195 195  
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198 198  {{/html}}
199 199  
200 200  
201 -=== 5. Run a workflow as an HPB job ===
192 +=== 4. Run a workflow as an HPB job ===
202 202  
203 203  A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
204 204  
vbi_workflow.png
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1 -XWiki.teodoramisan
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TVB Widgets