Last modified by teodoramisan on 2026/02/13 10:11
From version 70.1
edited by teodoramisan
on 2026/02/12 11:51
Change comment: There is no comment for this version
To version 68.1
edited by teodoramisan
on 2026/02/12 11:30
Change comment: There is no comment for this version

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164 164  === 1. Full TVB Simulation workflow ===
165 165  )))
166 166  
167 -Contains all TVB components necessary for running a TVB simulation (e.g., connectivity, coupling, model, integrator, monitor, simulator).
167 +Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
168 168  
169 169  {{html}}
170 170  <iframe width="1280" height="720" src="https://www.youtube.com/embed/bmqPlIJsWLk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
171 171  {{/html}}
172 172  
173 -=== 2. Full VBI Inference workflow ===
174 174  
175 -Contains all VBI components required to run an inference workflow (e.g., inference configuration, model, simulator, train posterior, sample posterior).
174 +=== 2. Configuring model parameters using the PhasePlaneWidget: ===
176 176  
177 -[[image:vbi_workflow.png||height="590" width="1100"]]
178 -
179 -
180 -=== 3. Configuring model parameters using the PhasePlaneWidget: ===
181 -
182 182  Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
183 183  
184 184  {{html}}
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185 185  <iframe width="1280" height="720" src="https://www.youtube.com/embed/jhGfYul1z9k" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
186 186  {{/html}}
187 187  
188 -=== 4. Using siibra to retrieve connectivities from the EBRAINS KG ===
189 189  
183 +=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
184 +
190 190  A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
191 191  
192 192  {{html}}
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193 193  <iframe width="1280" height="720" src="https://www.youtube.com/embed/hnqTpFGCYMg" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
194 194  {{/html}}
195 195  
196 -=== 5. Run a workflow as an HPB job ===
197 197  
192 +=== 4. Run a workflow as an HPB job ===
193 +
198 198  A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
199 199  
200 200  {{html}}<iframe width="1280" height="720" src="https://www.youtube.com/embed/M6rZClFgRrM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>{{/html}}
vbi_workflow.png
Author
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1 -XWiki.teodoramisan
Size
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1 -465.2 KB
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TVB Widgets