Last modified by teodoramisan on 2026/02/13 10:11
From version 72.1
edited by teodoramisan
on 2026/02/12 12:07
Change comment: There is no comment for this version
To version 67.2
edited by teodoramisan
on 2026/02/12 11:29
Change comment: There is no comment for this version

Summary

Details

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Content
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67 67  
68 68  The parameters need to be linked to the inputs of the component by dragging and dropping a connection from the output port of a literal/component towards the corresponding input port of the other component (e.g. the gray connections in the screenshot below).
69 69  
70 -Components and parameters include info buttons (**i**) that explain their purpose and how they are used (e.g. the simulator info panel below).
70 +Components and parameters include info buttons (i) that explain their purpose and how they are used (e.g. the simulator info panel below).
71 71  
72 72  [[image:Screenshot 2026-02-12 115445.png||alt="diagr.png" height="592" width="1100"]]
73 73  
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142 142  [[image:export-model-configuration.png||alt="image-20221116130425-1.png" data-xwiki-image-style-alignment="center" height="763" width="1000"]]
143 143  
144 144  
145 -=== 2. Visualize time series resulted from TVB simulations ===
145 +=== 2. Visualize time series resulted from simulations ===
146 146  
147 147  This functionality is available for the **StoreResultsToDrive** component. Right click on the **StoreResultsToDrive** and select the **Open Viewer** option:
148 148  
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164 164  === 1. Full TVB Simulation workflow ===
165 165  )))
166 166  
167 -Contains all TVB components necessary for running a TVB simulation (e.g., connectivity, coupling, model, integrator, monitor, simulator).
167 +Contains all TVB components necessary for running a TVB simulation (i.e. connectivity, coupling, model, integrator, monitor, simulator).
168 168  
169 169  {{html}}
170 170  <iframe width="1280" height="720" src="https://www.youtube.com/embed/bmqPlIJsWLk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
171 171  {{/html}}
172 172  
173 -=== 2. Full VBI Inference workflow ===
174 174  
175 -Contains all VBI components required to run an inference workflow (e.g., inference configuration, model, simulator, train posterior, sample posterior).
174 +=== 2. Configuring model parameters using the PhasePlaneWidget: ===
176 176  
177 -[[image:vbi_workflow.png||height="590" width="1100"]]
178 -
179 -=== 3. Configuring model parameters using the PhasePlaneWidget: ===
180 -
181 181  Same workflow as before, but the parameter for the model used in simulation are set using the PhasePlaneWidget.
182 182  
183 183  {{html}}
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184 184  <iframe width="1280" height="720" src="https://www.youtube.com/embed/jhGfYul1z9k" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
185 185  {{/html}}
186 186  
187 -=== 4. Using siibra to retrieve connectivities from the EBRAINS KG ===
188 188  
183 +=== 3. Using siibra to retrieve connectivities from the EBRAINS KG ===
184 +
189 189  A simulation workflow where **siibra **is used to retrieve a connectivity from the EBRAINS KG. That connectivity is fed into a TVB Simulator, where the rest of the parameters (coupling, model, etc.) are set to default values.
190 190  
191 191  {{html}}
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192 192  <iframe width="1280" height="720" src="https://www.youtube.com/embed/hnqTpFGCYMg" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
193 193  {{/html}}
194 194  
195 -=== 5. Run a workflow as an HPB job ===
196 196  
192 +=== 4. Run a workflow as an HPB job ===
193 +
197 197  A workflow simulation which is run remotely, by submitting a job to an HPC site and getting back the results (TimeSeries object).
198 198  
199 199  {{html}}<iframe width="1280" height="720" src="https://www.youtube.com/embed/M6rZClFgRrM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>{{/html}}
vbi_workflow.png
Author
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1 -XWiki.teodoramisan
Size
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1 -465.2 KB
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TVB Widgets