Summary

• Page properties (2 modified, 0 added, 0 removed)

Details

Page properties

Author

...	...	@@ -1,1 +1,1 @@
1		-XWiki.paulapopa
	1	+XWiki.ldomide

Content

...	...	@@ -1,6 +1,6 @@
1		-Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>https://github.com/the-virtual-brain/tvb-widgets]]
	1	+NOTE - Not yet released, but testable here
2	2
3		-Immediate testing: [[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/HeadWidget.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/HeadWidget.ipynb]]
	3	+[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks]]
4	4
5	5	== Purpose ==
6	6
...	...	@@ -38,28 +38,10 @@
38	38	from IPython.core.display_functions import display
39	39	)))
40	40
41		-Then, there are 2 options to work with the widget:
	41	+Then, we instantiate the **HeadWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget:
42	42
43		-1. Use a file browser to load the data and automatically display it
44		-1. Use directly the API to load the data and display it
45		-
46		-
47		-
48		-For the first option, you have to run the following 2 lines of code in a notebook cell and then just use the UI controls:
49		-
50	50	(% class="box" %)
51	51	(((
52		-widget = api.HeadBrowser()
53		-display(widget)
54		-)))
55		-
56		-
57		-For the second option, the API is described below:
58		-
59		-In a new cell, we instantiate the **HeadWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget:
60		-
61		-(% class="box" %)
62		-(((
63	63	widget = api.HeadWidget()
64	64
65	65	face = surfaces.FaceSurface().from_file()
...	...	@@ -93,11 +93,11 @@
93	93
94	94	seeg.configure()
95	95
96		-widget.add_datatype(seeg, api.HeadWidgetConfig(name='SEEG'))
	78	+widget.add_datatype(seeg, api.SurfaceWidgetConfig(name='SEEG'))
97	97	)))
98	98
99	99	{{html}}
100		-<iframe src="https://drive.google.com/file/d/1RLwts75Hh31LoPdWLK7QOM61KIsOabF1/preview" width="840" height="480" allow="autoplay"></iframe>
	82	+<iframe src="https://drive.google.com/file/d/1vFqqzXle8VGcHaLB-OdE-6BdetK9aJ1T/preview" width="840" height="480" allow="autoplay"></iframe>
101	101	{{/html}}
102	102
103	103	We can also provide a **RegionMapping** to be used as colormap for a surface:
...	...	@@ -106,7 +106,7 @@
106	106	(((
107	107	reg_map = region_mapping.RegionMapping.from_file()
108	108
109		-config = api.HeadWidgetConfig(name='Cortex')
	91	+config = api.SurfaceWidgetConfig(name='Cortex')
110	110
111	111	config.add_region_mapping_as_cmap(reg_map)
112	112
...	...	@@ -115,14 +115,9 @@
115	115
116	116	cortex.configure()
117	117
118		-
119		-widget = api.HeadWidget()
120		-
121	121	widget.add_datatype(cortex, config)
122		-
123		-display(widget)
124	124	)))
125	125
126	126	{{html}}
127		-<iframe src="https://drive.google.com/file/d/1zrbjdb8Y4V5rqg7Y7LDGlHHMS0RH8luz/preview" width="840" height="480" allow="autoplay"></iframe>
	104	+<iframe src="https://drive.google.com/file/d/1z2yEuQWUT2Poxh63adYbBdhKPcWGskex/preview" width="840" height="480" allow="autoplay"></iframe>
128	128	{{/html}}