Changes for page Widget 3D Head
Last modified by paulapopa on 2025/05/30 15:03
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... ... @@ -1,9 +1,7 @@ 1 1 Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>https://github.com/the-virtual-brain/tvb-widgets]] 2 2 3 - This is partof a Pypi release: [[https:~~/~~/pypi.org/project/tvb-widgets/>>https://pypi.org/project/tvb-widgets/]]3 +Immediate testing: [[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/HeadWidget.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/HeadWidget.ipynb]] 4 4 5 -//**tvb-widgets**// is also already installed in the official image released for EBRAINS lab, where you can test it directly. 6 - 7 7 == Purpose == 8 8 9 9 It is a Jupyter widget intended for visualization of the 3D Head data available for a patient: ... ... @@ -40,30 +40,10 @@ 40 40 from IPython.core.display_functions import display 41 41 ))) 42 42 43 -Then, the re are2options toworkwiththe widget:41 +Then, we instantiate the **HeadWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget: 44 44 45 -1. Use a file browser to load the data and automatically display it 46 -1. Use directly the API to load the data and display it 47 - 48 -For the first option, you have to run the following 2 lines of code in a notebook cell and then just use the UI controls: 49 - 50 50 (% class="box" %) 51 51 ((( 52 -widget = api.HeadBrowser() 53 -display(widget) 54 -))) 55 - 56 -{{html}} 57 -<iframe src="https://drive.google.com/file/d/1lY3X5eqJfOLmkmHuBa2iq_Aas8mDPa1e/preview" width="840" height="480" allow="autoplay"></iframe> 58 -{{/html}} 59 - 60 - 61 -For the second option, the API is described below: 62 - 63 -In a new cell, we instantiate the **HeadWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget: 64 - 65 -(% class="box" %) 66 -((( 67 67 widget = api.HeadWidget() 68 68 69 69 face = surfaces.FaceSurface().from_file() ... ... @@ -101,7 +101,7 @@ 101 101 ))) 102 102 103 103 {{html}} 104 -<iframe src="https://drive.google.com/file/d/1 RLwts75Hh31LoPdWLK7QOM61KIsOabF1/preview" width="840" height="480" allow="autoplay"></iframe>82 +<iframe src="https://drive.google.com/file/d/1vFqqzXle8VGcHaLB-OdE-6BdetK9aJ1T/preview" width="840" height="480" allow="autoplay"></iframe> 105 105 {{/html}} 106 106 107 107 We can also provide a **RegionMapping** to be used as colormap for a surface: ... ... @@ -119,14 +119,9 @@ 119 119 120 120 cortex.configure() 121 121 122 - 123 -widget = api.HeadWidget() 124 - 125 125 widget.add_datatype(cortex, config) 126 - 127 -display(widget) 128 128 ))) 129 129 130 130 {{html}} 131 -<iframe src="https://drive.google.com/file/d/1z rbjdb8Y4V5rqg7Y7LDGlHHMS0RH8luz/preview" width="840" height="480" allow="autoplay"></iframe>104 +<iframe src="https://drive.google.com/file/d/1z2yEuQWUT2Poxh63adYbBdhKPcWGskex/preview" width="840" height="480" allow="autoplay"></iframe> 132 132 {{/html}}