Summary

• Page properties (2 modified, 0 added, 0 removed)

Details

Page properties

Author

...	...	@@ -1,1 +1,1 @@
1		-XWiki.paulapopa
	1	+XWiki.reginafilange

Content

...	...	@@ -9,14 +9,17 @@
9	9	It is a Jupyter widget intended for visualization of the 3D Head data available for a patient:
10	10
11	11	* surfaces of different types (cortex, face, skull, etc)
12		-* connectivity region centers
	12	+* connectivity region centers and edges
13	13	* sensors locations (SEEG, MEG, EEG)
14	14
	15	+On cortical surfaces, it can also display region parcellation.
	16	+
15	15	== Inputs ==
16	16
17	17	It supports the above data in the form of their corresponding TVB datatypes:
18	18
19	19	* Surface (CorticalSurface, FaceSurface, etc)
	22	+* Parcellation (RegionMapping)
20	20	* Connectivity
21	21	* Sensors (SensorsInternal, SensorsMEG, SensorsEEG)
22	22
...	...	@@ -54,7 +54,8 @@
54	54	)))
55	55
56	56	{{html}}
57		-<iframe width="840" height="480" src="https://www.youtube.com/embed/BCCh-wdcnVo" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>{{/html}}
	60	+<iframe width="840" height="480" src="https://www.youtube.com/embed/BCCh-wdcnVo" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
	61	+{{/html}}
58	58
59	59
60	60	For the second option, the API is described below:
...	...	@@ -77,10 +77,8 @@
77	77	<iframe width="840" height="480" src="https://www.youtube.com/embed/8bmjKp3BYFA" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
78	78	{{/html}}
79	79
80		-Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times. A maximum of 10 datatypes are supported by this widget.
	84	+Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times.
81	81
82		-The **Config** object can be used to tweak the display options for each datatype.
83		-
84	84	In the code below, we add a **Connectivity** and SEEG **Sensors:**
85	85
86	86	(% class="box" %)
...	...	@@ -96,7 +96,7 @@
96	96
97	97	seeg.configure()
98	98
99		-widget.add_datatype(seeg, api.HeadWidgetConfig(name='SEEG'))
	101	+widget.add_datatype(seeg)
100	100	)))
101	101
102	102	{{html}}
...	...	@@ -103,29 +103,23 @@
103	103	<iframe width="840" height="480" src="https://www.youtube.com/embed/6UQhL9gd1HM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
104	104	{{/html}}
105	105
106		-We can also provide a **RegionMapping** to be used as colormap for a surface:
	108	+We can also provide a **RegionMapping** to be used as parcellation for a surface:
107	107
108	108	(% class="box" %)
109	109	(((
110	110	reg_map = region_mapping.RegionMapping.from_file()
111	111
112		-config = api.HeadWidgetConfig(name='Cortex')
113	113
114		-config.add_region_mapping_as_cmap(reg_map)
115		-
116		-
117	117	cortex = surfaces.CorticalSurface().from_file()
118	118
119	119	cortex.configure()
120	120
121	121
122		-widget = api.HeadWidget()
	120	+widget.add_datatype(cortex, reg_map)
123	123
124		-widget.add_datatype(cortex, config)
125		-
126	126	display(widget)
127	127	)))
128	128
129	129	{{html}}
130		-<iframe src="https://drive.google.com/file/d/1zrbjdb8Y4V5rqg7Y7LDGlHHMS0RH8luz/preview" width="840" height="480" allow="autoplay"></iframe>
	126	+<iframe width="840" height="480" src="https://www.youtube.com/embed/aDC2TJm2NxM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
131	131	{{/html}}