Summary

• Page properties (2 modified, 0 added, 0 removed)

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Page properties

Author

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1		-XWiki.paulapopa
	1	+XWiki.reginafilange

Content

...	...	@@ -9,14 +9,17 @@
9	9	It is a Jupyter widget intended for visualization of the 3D Head data available for a patient:
10	10
11	11	* surfaces of different types (cortex, face, skull, etc)
12		-* connectivity region centers
	12	+* connectivity region centers and edges
13	13	* sensors locations (SEEG, MEG, EEG)
14	14
	15	+On cortical surfaces, it can also display region parcellation.
	16	+
15	15	== Inputs ==
16	16
17	17	It supports the above data in the form of their corresponding TVB datatypes:
18	18
19	19	* Surface (CorticalSurface, FaceSurface, etc)
	22	+* Parcellation (RegionMapping)
20	20	* Connectivity
21	21	* Sensors (SensorsInternal, SensorsMEG, SensorsEEG)
22	22
...	...	@@ -78,10 +78,8 @@
78	78	<iframe width="840" height="480" src="https://www.youtube.com/embed/8bmjKp3BYFA" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
79	79	{{/html}}
80	80
81		-Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times. A maximum of 10 datatypes are supported by this widget.
	84	+Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times.
82	82
83		-The **Config** object can be used to tweak the display options for each datatype.
84		-
85	85	In the code below, we add a **Connectivity** and SEEG **Sensors:**
86	86
87	87	(% class="box" %)
...	...	@@ -97,7 +97,7 @@
97	97
98	98	seeg.configure()
99	99
100		-widget.add_datatype(seeg, api.HeadWidgetConfig(name='SEEG'))
	101	+widget.add_datatype(seeg)
101	101	)))
102	102
103	103	{{html}}
...	...	@@ -104,26 +104,20 @@
104	104	<iframe width="840" height="480" src="https://www.youtube.com/embed/6UQhL9gd1HM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
105	105	{{/html}}
106	106
107		-We can also provide a **RegionMapping** to be used as colormap for a surface:
	108	+We can also provide a **RegionMapping** to be used as parcellation for a surface:
108	108
109	109	(% class="box" %)
110	110	(((
111	111	reg_map = region_mapping.RegionMapping.from_file()
112	112
113		-config = api.HeadWidgetConfig(name='Cortex')
114	114
115		-config.add_region_mapping_as_cmap(reg_map)
116		-
117		-
118	118	cortex = surfaces.CorticalSurface().from_file()
119	119
120	120	cortex.configure()
121	121
122	122
123		-widget = api.HeadWidget()
	120	+widget.add_datatype(cortex, reg_map)
124	124
125		-widget.add_datatype(cortex, config)
126		-
127	127	display(widget)
128	128	)))
129	129