Summary

• Page properties (2 modified, 0 added, 0 removed)

Details

Page properties

Author

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1		-XWiki.reginafilange
	1	+XWiki.paulapopa

Content

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9	9	It is a Jupyter widget intended for visualization of the 3D Head data available for a patient:
10	10
11	11	* surfaces of different types (cortex, face, skull, etc)
12		-* connectivity region centers and edges
	12	+* connectivity region centers
13	13	* sensors locations (SEEG, MEG, EEG)
14	14
15		-On cortical surfaces, it can also display region parcellation.
16		-
17	17	== Inputs ==
18	18
19	19	It supports the above data in the form of their corresponding TVB datatypes:
20	20
21	21	* Surface (CorticalSurface, FaceSurface, etc)
22		-* Parcellation (RegionMapping)
23	23	* Connectivity
24	24	* Sensors (SensorsInternal, SensorsMEG, SensorsEEG)
25	25
...	...	@@ -57,8 +57,7 @@
57	57	)))
58	58
59	59	{{html}}
60		-<iframe width="840" height="480" src="https://www.youtube.com/embed/BCCh-wdcnVo" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
61		-{{/html}}
	57	+<iframe width="840" height="480" src="https://www.youtube.com/embed/BCCh-wdcnVo" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>{{/html}}
62	62
63	63
64	64	For the second option, the API is described below:
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81	81	<iframe width="840" height="480" src="https://www.youtube.com/embed/8bmjKp3BYFA" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
82	82	{{/html}}
83	83
84		-Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times.
	80	+Next, we can continue adding other datatypes to this widget, by calling //**add_datatype**// multiple times. A maximum of 10 datatypes are supported by this widget.
85	85
	82	+The **Config** object can be used to tweak the display options for each datatype.
	83	+
86	86	In the code below, we add a **Connectivity** and SEEG **Sensors:**
87	87
88	88	(% class="box" %)
...	...	@@ -98,7 +98,7 @@
98	98
99	99	seeg.configure()
100	100
101		-widget.add_datatype(seeg)
	99	+widget.add_datatype(seeg, api.HeadWidgetConfig(name='SEEG'))
102	102	)))
103	103
104	104	{{html}}
...	...	@@ -105,23 +105,29 @@
105	105	<iframe width="840" height="480" src="https://www.youtube.com/embed/6UQhL9gd1HM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
106	106	{{/html}}
107	107
108		-We can also provide a **RegionMapping** to be used as parcellation for a surface:
	106	+We can also provide a **RegionMapping** to be used as colormap for a surface:
109	109
110	110	(% class="box" %)
111	111	(((
112	112	reg_map = region_mapping.RegionMapping.from_file()
113	113
	112	+config = api.HeadWidgetConfig(name='Cortex')
114	114
	114	+config.add_region_mapping_as_cmap(reg_map)
	115	+
	116	+
115	115	cortex = surfaces.CorticalSurface().from_file()
116	116
117	117	cortex.configure()
118	118
119	119
120		-widget.add_datatype(cortex, reg_map)
	122	+widget = api.HeadWidget()
121	121
	124	+widget.add_datatype(cortex, config)
	125	+
122	122	display(widget)
123	123	)))
124	124
125	125	{{html}}
126		-<iframe width="840" height="480" src="https://www.youtube.com/embed/aDC2TJm2NxM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
	130	+<iframe src="https://drive.google.com/file/d/1zrbjdb8Y4V5rqg7Y7LDGlHHMS0RH8luz/preview" width="840" height="480" allow="autoplay"></iframe>
127	127	{{/html}}