Summary

• Page properties (3 modified, 0 added, 0 removed)

Details

Page properties

Title

...	...	@@ -1,1 +1,1 @@
1		-Widget 3D
	1	+Widget 3D Head

Author

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1		-XWiki.paulapopa
	1	+XWiki.ldomide

Content

...	...	@@ -1,8 +1,10 @@
1		-TODO
	1	+NOTE - Not yet released, but testable here
2	2
	3	+[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks]]
	4	+
3	3	== Purpose ==
4	4
5		-It is a Jupyter widget intended for visualization of the 3D data available for a patient:
	7	+It is a Jupyter widget intended for visualization of the 3D Head data available for a patient:
6	6
7	7	* surfaces of different types (cortex, face, skull, etc)
8	8	* connectivity region centers
...	...	@@ -36,18 +36,18 @@
36	36	from IPython.core.display_functions import display
37	37	)))
38	38
39		-Then, we instantiate the **ThreeDWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget:
	41	+Then, we instantiate the **HeadWidget** and a **FaceSurface** datatype that we want to visualize. Using the //**add_datatype**// method we add the surface to our widget and __display__ the widget:
40	40
41	41	(% class="box" %)
42	42	(((
43		-widget_3d = api.ThreeDWidget()
	45	+widget = api.HeadWidget()
44	44
45	45	face = surfaces.FaceSurface().from_file()
46	46
47	47	face.configure()
48	48
49		-widget_3d.add_datatype(face)
50		-display(widget_3d)
	51	+widget.add_datatype(face)
	52	+display(widget)
51	51	)))
52	52
53	53	{{html}}
...	...	@@ -66,7 +66,7 @@
66	66
67	67	conn.configure()
68	68
69		-widget_3d.add_datatype(conn)
	71	+widget.add_datatype(conn)
70	70
71	71
72	72	seeg = sensors.SensorsInternal().from_file()
...	...	@@ -73,9 +73,13 @@
73	73
74	74	seeg.configure()
75	75
76		-widget_3d.add_datatype(seeg, api.Config(name='SEEG'))
	78	+widget.add_datatype(seeg, api.SurfaceWidgetConfig(name='SEEG'))
77	77	)))
78	78
	81	+{{html}}
	82	+<iframe src="https://drive.google.com/file/d/1vFqqzXle8VGcHaLB-OdE-6BdetK9aJ1T/preview" width="840" height="480" allow="autoplay"></iframe>
	83	+{{/html}}
	84	+
79	79	We can also provide a **RegionMapping** to be used as colormap for a surface:
80	80
81	81	(% class="box" %)
...	...	@@ -82,7 +82,7 @@
82	82	(((
83	83	reg_map = region_mapping.RegionMapping.from_file()
84	84
85		-config = api.Config(name='Cortex')
	91	+config = api.SurfaceWidgetConfig(name='Cortex')
86	86
87	87	config.add_region_mapping_as_cmap(reg_map)
88	88
...	...	@@ -91,9 +91,9 @@
91	91
92	92	cortex.configure()
93	93
94		-widget_3d.add_datatype(cortex, config)
	100	+widget.add_datatype(cortex, config)
	101	+)))
95	95
96	96	{{html}}
97		-<iframe src=" https://drive.google.com/file/d/1PXsxLqydNDDORIK85cQaEgGt9QdWLcC7/preview" width="840" height="480" allow="autoplay"></iframe>
	104	+<iframe src="https://drive.google.com/file/d/1z2yEuQWUT2Poxh63adYbBdhKPcWGskex/preview" width="840" height="480" allow="autoplay"></iframe>
98	98	{{/html}}
99		-)))