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Changes for page Widget Connectivity

Last modified by paulapopa on 2025/06/24 14:15
From version 1.1
edited by davidbacter01
on 2023/09/19 10:08
Change comment: Uploaded new attachment "image-20230919110833-1.png", version {1}
To version 3.1
edited by davidbacter01
on 2023/09/19 10:22
Change comment: There is no comment for this version

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1 +Widget Connectivity
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1 +Collabs.tvb-widgets.WebHome
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1 +== Widget Connectivity ==
2 +
3 +Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>url:https://github.com/the-virtual-brain/tvb-widgets]]
4 +
5 +This is part of a Pypi release: [[https:~~/~~/pypi.org/project/tvb-widgets/>>url:https://pypi.org/project/tvb-widgets/]]
6 +
7 +//**tvb-widgets**// is also already installed in the official image released for EBRAINS lab, where you can test it directly.
8 +
9 +
10 +== Purpose ==
11 +
12 +Jupyter lab widget for visualizing or do operations on a connectivity
13 +
14 +
15 +=== Visualization: ===
16 +
17 + - in 2D can visualize weights or tracts matrixes;
18 +
19 +[[image:image-20230919110833-1.png]]
20 +
21 + - in 3D can visualize regions and their respective edges
22 +
23 +
24 +==== [[image:image-20230919110853-2.png]] ====
25 +
26 +
27 +=== Operations: ===
28 +
29 + - remove selected nodes from a connectivity, results in a new connectivity containing only the nodes that were not selected;
30 +
31 + - remove unselected nodes from a connectivity, results in a new connectivity containing only the selected nodes;
32 +
33 + - remove unselected edges, results in a new connectivity with the same number of regions but without the edges of unselected regions;
34 +
35 + - remove selected edges,  results in a new connectivity with the same number of regions but without the edges of selected regions.
36 +
37 +
38 +=== Usage: ===
39 +
40 +After instantiating the widget it allows export of the currently selected connectivity:
41 +
42 +{{code language="python"}}
43 +from tvbwidgets.api import ConnectivityWidget
44 +from tvb.datatypes.connectivity import Connectivity
45 +
46 +import pyvista as pv
47 +
48 +
49 +pv.set_jupyter_backend('pythreejs')
50 +
51 +conn = Connectivity.from_file() # defaults to connectivy_76.zip
52 +conn.configure()
53 +
54 +wid = ConnectivityWidget(conn, default_active_tab='viewers') # default_active_tab can be any value between 'viewers'|'operations'|'both'
55 +
56 +display(wid)
57 +# ....do some operations...
58 +# replace None in the method below with the gid of the connectivity you wish to export
59 +# if no gid is provided it will export the connectivity currently viewed
60 +
61 +new_connectivity = wid.get_connectivity(gid=None)
62 +new_connectivity
63 +{{/code}}
64 +
65 +
image-20230919110853-2.png
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1 +XWiki.davidbacter01
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Public

TVB Widgets