Wiki source code of Widget Connectivity

Version 3.1 by davidbacter01 on 2023/09/19 10:22

author	version	line-number	content
		1	== Widget Connectivity ==
		2
		3	Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>url:https://github.com/the-virtual-brain/tvb-widgets]]
		4
		5	This is part of a Pypi release: [[https:~~/~~/pypi.org/project/tvb-widgets/>>url:https://pypi.org/project/tvb-widgets/]]
		6
		7	//tvb-widgets// is also already installed in the official image released for EBRAINS lab, where you can test it directly.
		8
		9
		10	== Purpose ==
		11
		12	Jupyter lab widget for visualizing or do operations on a connectivity
		13
		14
		15	=== Visualization: ===
		16
		17	- in 2D can visualize weights or tracts matrixes;
		18
		19	[[image:image-20230919110833-1.png]]
		20
		21	- in 3D can visualize regions and their respective edges
		22
		23
		24	==== [[image:image-20230919110853-2.png]] ====
		25
		26
		27	=== Operations: ===
		28
		29	- remove selected nodes from a connectivity, results in a new connectivity containing only the nodes that were not selected;
		30
		31	- remove unselected nodes from a connectivity, results in a new connectivity containing only the selected nodes;
		32
		33	- remove unselected edges, results in a new connectivity with the same number of regions but without the edges of unselected regions;
		34
		35	- remove selected edges, results in a new connectivity with the same number of regions but without the edges of selected regions.
		36
		37
		38	=== Usage: ===
		39
		40	After instantiating the widget it allows export of the currently selected connectivity:
		41
		42	{{code language="python"}}
		43	from tvbwidgets.api import ConnectivityWidget
		44	from tvb.datatypes.connectivity import Connectivity
		45
		46	import pyvista as pv
		47
		48
		49	pv.set_jupyter_backend('pythreejs')
		50
		51	conn = Connectivity.from_file() # defaults to connectivy_76.zip
		52	conn.configure()
		53
		54	wid = ConnectivityWidget(conn, default_active_tab='viewers') # default_active_tab can be any value between 'viewers'\|'operations'\|'both'
		55
		56	display(wid)
		57	# ....do some operations...
		58	# replace None in the method below with the gid of the connectivity you wish to export
		59	# if no gid is provided it will export the connectivity currently viewed
		60
		61	new_connectivity = wid.get_connectivity(gid=None)
		62	new_connectivity
		63	{{/code}}
		64
		65

Wiki source code of Widget Connectivity

TVB Widgets