Changes for page Widget PSE

Last modified by teodoramisan on 2023/07/21 14:55

From version 17.1
edited by teodoramisan
on 2023/07/21 12:15
Change comment: There is no comment for this version
To version 14.1
edited by teodoramisan
on 2023/07/21 11:52
Change comment: There is no comment for this version

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... ... @@ -57,28 +57,15 @@
57 57  from tvb.simulator.lab import *
58 58  )))
59 59  
60 - The launcher widget can be initialized with more parameters: a simulator, a list of connectivities and an HPC configuration (only the simulator being a required argument). For HPC launch, besides the configuration part, an EBrains token needs to be stored. A custom initialization, which includes the HPC launch, is shown below:
60 + The launcher widget can be initialized with more parameters: a simulator, a list of connectivities and an HPC configuration (only the simulator being a required argument). For HPC launch, besides the configuration part, an Ebrains token needs to be stored. A custom initialization, which includes the HPCis shown below:
61 61  
62 62  (% class="box" %)
63 63  (((
64 -os.environ['CLB_AUTH'] = 'PUT YOUR EBRAINS TOKEN HERE IF YOU WANT HPC RUNS'
65 -
66 -from pyunicore.helpers.jobs import Resources
67 -res = Resources(cpus_per_node=4)
68 -
69 - # !! Pay attention to env name and dir you might need to change if in conflict on the SAME project with another colleague of yours!!
70 -
71 -hpc_config = HPCConfig(site="JUSUF", project="icei-hbp-2021-0007", 
72 - env_dir="tvb_widget", env_name="venv_tvb", n_threads=None, resources=res)
73 -)))
74 -
75 -(% class="box" %)
76 -(((
77 77  sim = simulator.Simulator(connectivity = connectivity.Connectivity.from_file())
78 78  conn_66 = connectivity.Connectivity.from_file("connectivity_66.zip")
79 79  conn_68 = connectivity.Connectivity.from_file("connectivity_68.zip")
80 80  conn_76 = connectivity.Connectivity.from_file()
81 -launch = PSELauncher(sim, [conn_66, conn_68, conn_76], hpc_config)
68 +launch = PSELauncher(sim, [conn_66, conn_68, conn_76])
82 82  )))
83 83  
84 84  The outcome will be something like in the image bellow.
... ... @@ -86,26 +86,12 @@
86 86  
87 87  [[image:setup_parameters.png||alt="setup_parameters" style="float:left"]]
88 88  
89 -
90 -
91 -
92 -
93 -
94 -
95 -
96 -
97 -
98 -
99 99  Then, a file name has to be inserted in the indicated box(for storing the data) and as a last set-up, a launch type has to be chosen.
100 100  
78 +[[image:launch.png||alt="launch" style="float:left"]]
101 101  
102 -The progress of the launch can be monitored by a progress bar, as shown below:
80 +A file with the name you specified will be generated.
103 103  
104 -(% style="text-align:center" %)
105 -[[image:image-20230721150554-1.png]]
106 -
107 -A file with the name you specified will be generated in both approaches, HPC or local launch.
108 -
109 109  Then, the PSEVisualizer can be called with the required parameter(file_name) as it shows below:
110 110  
111 111  (% class="box" %)
image-20230721150554-1.png
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1 -XWiki.teodoramisan
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1 -XWiki.teodoramisan
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TVB Widgets