Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -2,7 +2,6 @@
2	2
3	3	Immediate testing: [[https:~~/~~/lab.ch.ebrains.eu/user/teodoramisan/lab/workspaces/auto-3/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/PhasePlane.ipynb>>https://lab.ch.ebrains.eu/user/teodoramisan/lab/workspaces/auto-3/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/PhasePlane.ipynb]]
4	4
5		-
6	6	== Purpose ==
7	7
8	8	It is a Jupyter Widget intended for the visualization of the interactive phase-plane.
...	...	@@ -9,29 +9,91 @@
9	9
10	10	It provides sliders for setting:
11	11
12		-*
	11	+* (((
	12	+ The value of all parameters of the Model.
	13	+)))
	14	+* (((
	15	+ The extent of the axes.
	16	+)))
	17	+* (((
	18	+ A fixed value for the state-variables which aren't currently selected.
	19	+)))
	20	+* (((
	21	+ The noise strength, if a stochastic integrator is specified.
	22	+)))
13	13
14		-{{{ The value of all parameters of the Model.}}}
15		-*
	24	+and dropdown lists for selecting:
16	16
17		-{{{ The extent of the axes.}}}
18		-*
	26	+* (((
	27	+ Which state-variables to show on each axis.
	28	+)))
	29	+* (((
	30	+ Which mode to show, if the Model has them.
	31	+)))
19	19
20		-{{{ A fixed value for the state-variables which aren't currently selected.}}}
21		-*
	33	+Entering the coordinates in the X,Y Coordinate Boxes will generate a sample
	34	+trajectory, originating from the coordinates entered.
22	22
23		-{{{ The noise strength, if a stochastic integrator is specified.}}}
	36	+== Inputs ==
24	24
25		-and dropdown lists for selecting:
	38	+Phase-Plane viewer will be represented in the beginning based on the parameters that it receives:
26	26
27		-*
	40	+* Model (Generic2dOscillator, Epileptor, Hopfield, etc.)
	41	+* Integrator (HeunDeterministic, HeunStochastic, Identity, etc.)
28	28
29		-{{{ Which state-variables to show on each axis.
	43	+== Requirements and installation ==
	44	+
	45	+Before installing the tvb-widgets library containing the PhasePlane widget, the following python libraries and Jupyter extensions should be installed:
	46	+
	47	+* **Libraries:​​​​​**
	48	+** ​​​​​​[[ipympl>>https://github.com/matplotlib/ipympl#installation]]
	49	+* **Extensions:**
	50	+
	51	+(% class="box" %)
	52	+(((
	53	+jupyter labextension install @jupyter-widgets/jupyterlab-manager
	54	+
	55	+jupyter labextension install jupyter-matplotlib
	56	+)))
	57	+
	58	+Then, to install the tvb-widgets library, just type:
	59	+
	60	+(% class="box" %)
	61	+(((
	62	+pip install tvb-widgets
	63	+)))
	64	+
	65	+== API usage ==
	66	+
	67	+First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command:
	68	+
	69	+(% class="box" %)
	70	+(((
	71	+%matplotlib widget
	72	+)))
	73	+
	74	+Then, the PhasePlaneWidget (from the tvb-widgets API), the package lab (from tvb simulator) and the display function should be imported:
	75	+
	76	+(% class="box" %)
	77	+(((
	78	+{{{from tvbwidgets.api import PhasePlaneWidget
	79	+from tvb.simulator.lab import *
30	30	}}}
31		-*
32	32
33		-{{{ Which mode to show, if the Model has them.}}}
	82	+{{{from IPython.core.display_functions import display}}}
	83	+)))
34	34
	85	+The widget can be initialized with the required parameters (Model and Integrator) as it shows below:
35	35
36		-{{{Entering the coordinates in the X,Y Coordinate Boxes will generate a sample
37		-trajectory, originating from the coordinates entered.}}}
	87	+(% class="box" %)
	88	+(((
	89	+{{{w = PhasePlaneWidget(model=models.Generic2dOscillator(),
	90	+ integrator=integrators.HeunDeterministic())}}}
	91	+)))
	92	+
	93	+Finally, to display and interact with the PhasePlane widget, the **//get_widget//**// //method is used inside the //**display **//function:
	94	+
	95	+(% class="box" %)
	96	+(((
	97	+{{{display(w.get_widget(plot_size=(6,7)))}}}
	98	+)))