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Changes for page Widget PhasePlane

Last modified by ldomide on 2023/03/08 17:28

From version 1.3
edited by teodoramisan
on 2023/01/03 12:04
Change comment: There is no comment for this version
To version 4.1
edited by teodoramisan
on 2023/01/03 13:36
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -6,7 +6,7 @@
6 6  
7 7  It is a Jupyter Widget intended for the visualization of the interactive phase-plane.
8 8  
9 -It provides sliders for setting:
9 +It provides **//sliders//** for setting:
10 10  
11 11  * (((
12 12   The value of all parameters of the Model.
... ... @@ -21,7 +21,7 @@
21 21   The noise strength, if a stochastic integrator is specified.
22 22  )))
23 23  
24 -and dropdown lists for selecting:
24 +and **//dropdown lists//** for selecting:
25 25  
26 26  * (((
27 27   Which state-variables to show on each axis.
... ... @@ -30,5 +30,69 @@
30 30   Which mode to show, if the Model has them.
31 31  )))
32 32  
33 -{{{Entering the coordinates in the X,Y Coordinate Boxes will generate a sample
34 -trajectory, originating from the coordinates entered.}}}
33 +Entering the coordinates in the X,Y Coordinate Boxes will generate a sample
34 +trajectory, originating from the coordinates entered.
35 +
36 +== Inputs ==
37 +
38 +Phase-Plane viewer will be represented in the beginning based on the parameters that it receives:
39 +
40 +* Model (Generic2dOscillator, Epileptor, Hopfield, etc.)
41 +* Integrator (HeunDeterministic, HeunStochastic, Identity, etc.)
42 +
43 +== Requirements and installation ==
44 +
45 +Before installing the tvb-widgets library containing the PhasePlane widget, the following python library and Jupyter extensions should be installed:
46 +
47 +* **Libraries:​​​​​**
48 +** ​​​​​​[[ipympl>>https://github.com/matplotlib/ipympl#installation]]
49 +* **Extensions:**
50 +
51 +(% class="box" %)
52 +(((
53 +jupyter labextension install @jupyter-widgets/jupyterlab-manager
54 +
55 +jupyter labextension install jupyter-matplotlib
56 +)))
57 +
58 +Then, to install the tvb-widgets library, just type:
59 +
60 +(% class="box" %)
61 +(((
62 +pip install tvb-widgets
63 +)))
64 +
65 +== API usage ==
66 +
67 +First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command:
68 +
69 +(% class="box" %)
70 +(((
71 +%matplotlib widget
72 +)))
73 +
74 +Then, the PhasePlaneWidget (from the tvb-widgets API), the package lab (from tvb simulator) and the display function should be imported:
75 +
76 +(% class="box" %)
77 +(((
78 +{{{from tvbwidgets.api import PhasePlaneWidget
79 +from tvb.simulator.lab import *
80 +}}}
81 +
82 +{{{from IPython.core.display_functions import display}}}
83 +)))
84 +
85 +The widget can be initialized with the required parameters (Model and Integrator) as it shows below:
86 +
87 +(% class="box" %)
88 +(((
89 +{{{w = PhasePlaneWidget(model=models.Generic2dOscillator(),
90 + integrator=integrators.HeunDeterministic())}}}
91 +)))
92 +
93 +Finally, to display and interact with the PhasePlane widget, the **//get_widget//**// //method is used inside the //**display **//function:
94 +
95 +(% class="box" %)
96 +(((
97 +{{{display(w.get_widget(plot_size=(6,7)))}}}
98 +)))
Public

TVB Widgets