Changes for page Widget TimeSeries
Last modified by ldomide on 2023/05/23 14:34
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... ... @@ -1,78 +1,14 @@ 1 - ==Purpose==1 +! pip install -i tvb-widgets 2 2 3 - It is a Jupyter widgetintended for the visualizationof brain signals representedas time.3 +from tvbwidgets.api import TimeseriesWidget 4 4 5 -== Inputs == 6 - 7 -Time series can be given as inputs in two forms: 8 - 9 -* TVB TimeSeries datatype 10 -* Numpy arrays 11 - 12 -This widget supports 2D, 3D, and 4D arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects: 13 - 14 -* for **2D**: (no_timepoints, no_channels) 15 -* for **3D**: (no_timepoints, state_variable/mode, no_channels) 16 -* for **4D**: (no_timepoints, state_variable, no_channels, mode) 17 - 18 -~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape. 19 - 20 -== Requirements and installation == 21 - 22 -Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter extensions should be installed: 23 - 24 -* **Libraries:** 25 -** mne, [[ipympl>>https://github.com/matplotlib/ipympl#installation]] 26 -* ((( 27 -**Extensions:** 28 - 29 -(% class="box" %) 30 -((( 31 -jupyter labextension install @jupyter-widgets/jupyterlab-manager 32 - 33 -jupyter labextension install jupyter-matplotlib 34 -))) 35 -))) 36 - 37 -Then, to install the tvb-widgets library, just type: 38 - 39 -(% class="box" %) 40 -((( 41 -pip install tvb-widgets 42 -))) 43 - 44 -== API usage == 45 - 46 -First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command: 47 - 48 -(% class="box" %) 49 -((( 50 -%matplotlib widget 51 -))) 52 - 53 - Then, the **TimeSeriesWidget** (from the tvb-widgets API) and the **//display//** function should be imported: 54 - 55 -(% class="box" %) 56 -((( 57 -from tvbwidgets.api import TimeSeriesWidget 58 58 from IPython.core.display_functions import display 59 -))) 60 60 61 - Assumingthatthe user has already created orimported a valid input, thisis how thewidget can be initialized and how an input can be assignedto it, usingthe//**add_datatype** //method(example below assumes that **//tsr// **is a TVB TimeSeries datatype):7 +tw = TimeseriesWidget(...) 62 62 63 -(% class="box" %) 64 -((( 65 -tsw = TimeSeriesWidget() 66 -tsw.add_datatype(tsr) 67 -))) 9 +{{{display(tw.get_widget())}}} 68 68 69 -Finally, to display and interact with the TimeSeries widget, the **//get_widget//**// //method is used inside the //**display **//function: 11 +{{{ 12 + }}} 70 70 71 -(% class="box" %) 72 -((( 73 -display(tsw.get_widget()) 74 -))) 75 - 76 -{{html}} 77 -<iframe src="https://drive.google.com/file/d/1g4ryY1VIFMUD14Mb6Dq_KVb0b2_XU4VX/preview" width="840" height="480" allow="autoplay"></iframe> 78 -{{/html}} 14 +
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