Changes for page Widget TimeSeries
Last modified by ldomide on 2023/05/23 14:34
From version 20.1
edited by rominabaila
on 2022/04/14 16:30
on 2022/04/14 16:30
Change comment:
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To version 12.1
edited by rominabaila
on 2022/04/12 09:31
on 2022/04/12 09:31
Change comment:
There is no comment for this version
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... ... @@ -2,27 +2,28 @@ 2 2 3 3 It is a Jupyter widget intended for the visualization of brain signals represented as time series. 4 4 5 + 5 5 == Inputs == 6 6 7 - Time seriescan be givenas inputsintwoforms:8 +It supports time series inputs of two types: 8 8 9 9 * TVB TimeSeries datatype 10 10 * Numpy arrays 11 11 12 -Th iswidget supports 2D, 3D, and 4Darrays. In all three cases, there is a fixed shape that the TimeSeries widget expects:13 +The widget supports 2-, 3-, and 4-dimensional arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects: 13 13 14 14 * for **2D**: (no_timepoints, no_channels) 15 15 * for **3D**: (no_timepoints, state_variable/mode, no_channels) 16 16 * for **4D**: (no_timepoints, state_variable, no_channels, mode) 17 17 18 -~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape. 19 +~* Note that the TVB TimeSeries datatype is always is always 4D and already has the expected shape. 19 19 21 + 20 20 == Requirements and installation == 21 21 22 -Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter extensions should be installed: 24 +Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter Notebook extensions should be installed: 23 23 24 24 * **Libraries:** 25 -** [[mne>>https://mne.tools/0.24/install/index.html]] version 0.24 26 26 ** [[ipympl>>https://github.com/matplotlib/ipympl#installation]] 27 27 * ((( 28 28 **Extensions:** ... ... @@ -41,39 +41,3 @@ 41 41 ((( 42 42 pip install tvb-widgets 43 43 ))) 44 - 45 -== API usage == 46 - 47 -First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command: 48 - 49 -(% class="box" %) 50 -((( 51 -%matplotlib widget 52 -))) 53 - 54 - Then, the **TimeSeriesWidget** (from the tvb-widgets API) and the **//display//** function should be imported: 55 - 56 -(% class="box" %) 57 -((( 58 -from tvbwidgets.api import TimeSeriesWidget 59 -from IPython.core.display_functions import display 60 -))) 61 - 62 -Assuming that the user has already created or imported a valid input, this is how the widget can be initialized and how an input can be assigned to it, using the //**add_datatype** //method (example below assumes that **//tsr// **is a TVB TimeSeries datatype): 63 - 64 -(% class="box" %) 65 -((( 66 -tsw = TimeSeriesWidget() 67 -tsw.add_datatype(tsr) 68 -))) 69 - 70 -Finally, to display and interact with the TimeSeries widget, the **//get_widget//**// //method is used inside the //**display **//function: 71 - 72 -(% class="box" %) 73 -((( 74 -display(tsw) 75 -))) 76 - 77 -{{html}} 78 -<iframe src="https://drive.google.com/file/d/1g4ryY1VIFMUD14Mb6Dq_KVb0b2_XU4VX/preview" width="840" height="480" allow="autoplay"></iframe> 79 -{{/html}}