Changes for page Widget TimeSeries
Last modified by ldomide on 2023/05/23 14:34
From version 21.1
edited by ldomide
on 2022/05/10 10:57
on 2022/05/10 10:57
Change comment:
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To version 16.1
edited by rominabaila
on 2022/04/12 13:13
on 2022/04/12 13:13
Change comment:
There is no comment for this version
Summary
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Page properties (2 modified, 0 added, 0 removed)
Details
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... ... @@ -1,1 +1,1 @@ 1 -XWiki. ldomide1 +XWiki.rominabaila - Content
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... ... @@ -1,32 +5,28 @@ 1 -**NOTE** - Not yet released, but testable here 2 - 3 -[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks]] 4 - 5 5 == Purpose == 6 6 7 7 It is a Jupyter widget intended for the visualization of brain signals represented as time series. 8 8 5 + 9 9 == Inputs == 10 10 11 - Time seriescan be givenas inputsintwoforms:8 +It supports time series inputs of two types: 12 12 13 13 * TVB TimeSeries datatype 14 14 * Numpy arrays 15 15 16 -Th iswidget supports 2D, 3D, and 4Darrays. In all three cases, there is a fixed shape that the TimeSeries widget expects:13 +The widget supports 2-, 3-, and 4-dimensional arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects: 17 17 18 18 * for **2D**: (no_timepoints, no_channels) 19 19 * for **3D**: (no_timepoints, state_variable/mode, no_channels) 20 20 * for **4D**: (no_timepoints, state_variable, no_channels, mode) 21 21 22 -~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape. 19 +~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape. 23 23 24 24 == Requirements and installation == 25 25 26 -Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter extensions should be installed: 23 +Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter Notebook extensions should be installed: 27 27 28 28 * **Libraries:** 29 -** [[mne>>https://mne.tools/0.24/install/index.html]] version 0.24 30 30 ** [[ipympl>>https://github.com/matplotlib/ipympl#installation]] 31 31 * ((( 32 32 **Extensions:** ... ... @@ -46,6 +46,7 @@ 46 46 pip install tvb-widgets 47 47 ))) 48 48 45 + 49 49 == API usage == 50 50 51 51 First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command: ... ... @@ -55,7 +55,7 @@ 55 55 %matplotlib widget 56 56 ))) 57 57 58 - Then, the **TimeSeriesWidget**(from the tvb-widgets API) and the**//display//**function should be imported:55 + Then, the TimeSeries widget (from the tvb-widgets API) and the display function should be imported: 59 59 60 60 (% class="box" %) 61 61 ((( ... ... @@ -75,7 +75,7 @@ 75 75 76 76 (% class="box" %) 77 77 ((( 78 -display(tsw) 75 +display(tsw.get_widget()) 79 79 ))) 80 80 81 81 {{html}}