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Changes for page Widget TimeSeries

Last modified by ldomide on 2023/05/23 14:34

From version 21.1
edited by ldomide
on 2022/05/10 10:57
Change comment: There is no comment for this version
To version 16.1
edited by rominabaila
on 2022/04/12 13:13
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
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1 -XWiki.ldomide
1 +XWiki.rominabaila
Content
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1 -**NOTE** - Not yet released, but testable here
2 -
3 -[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks>>url:https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks]]
4 -
5 5  == Purpose ==
6 6  
7 7  It is a Jupyter widget intended for the visualization of brain signals represented as time series.
8 8  
5 +
9 9  == Inputs ==
10 10  
11 -Time series can be given as inputs in two forms:
8 +It supports time series inputs of two types:
12 12  
13 13  * TVB TimeSeries datatype
14 14  * Numpy arrays
15 15  
16 -This widget supports 2D, 3D, and 4D arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects:
13 +The widget supports 2-, 3-, and 4-dimensional arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects:
17 17  
18 18  * for **2D**: (no_timepoints, no_channels)
19 19  * for **3D**: (no_timepoints, state_variable/mode, no_channels)
20 20  * for **4D**: (no_timepoints, state_variable, no_channels, mode)
21 21  
22 -~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape.
19 +~* Note that the TVB TimeSeries datatype is always 4D and already has the expected shape.
23 23  
24 24  == Requirements and installation ==
25 25  
26 -Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter extensions should be installed:
23 +Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and  Jupyter Notebook extensions should be installed:
27 27  
28 28  * **Libraries:**
29 -** [[mne>>https://mne.tools/0.24/install/index.html]] version 0.24
30 30  ** [[ipympl>>https://github.com/matplotlib/ipympl#installation]]
31 31  * (((
32 32  **Extensions:**
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46 46  pip install tvb-widgets
47 47  )))
48 48  
45 +
49 49  == API usage ==
50 50  
51 51  First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command:
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55 55  %matplotlib widget
56 56  )))
57 57  
58 - Then, the **TimeSeriesWidget** (from the tvb-widgets API) and the **//display//** function should be imported:
55 + Then, the TimeSeries widget (from the tvb-widgets API) and the display function should be imported:
59 59  
60 60  (% class="box" %)
61 61  (((
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75 75  
76 76  (% class="box" %)
77 77  (((
78 -display(tsw)
75 +display(tsw.get_widget())
79 79  )))
80 80  
81 81  {{html}}
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TVB Widgets