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  • matplotlib.png
  • plotly.png

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Author

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1		-XWiki.rominabaila
	1	+XWiki.ldomide

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1	1	Source code: [[https:~~/~~/github.com/the-virtual-brain/tvb-widgets>>url:https://github.com/the-virtual-brain/tvb-widgets]]
2	2
3		-This is part of a Pypi release: [[https:~~/~~/pypi.org/project/tvb-widgets/>>url:https://pypi.org/project/tvb-widgets/]]
	3	+Immediate testing: [[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/TimeSeriesTVB.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/TimeSeriesTVB.ipynb]] or here: [[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/TimeSeriesArray.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/TVB%20Widgets/REPO/tvb-widgets/notebooks/TimeSeriesArray.ipynb]]
4	4
5		-//**tvb-widgets**// is also already installed in the official image released for EBRAINS lab, where you can test it directly.
6		-
7	7	== Purpose ==
8	8
9	9	It is a Jupyter Widget intended for the visualization of brain signals represented as time series.
10	10
11		-== Backends ==
12		-
13		-Starting with //**tvb-widgets 1.5.0**, //the TS widget comes in 2 forms, corresponding to the 2 different libraries (we called them backends) used for plotting: **matplotlib **and **plotly**. The matplotlib backend, build on top of the **mne** library, offers more advanced scientifical features, while the plotly backend has a more appealing look and moves faster when talking about the basic interactions.
14		-
15		-Below you can see the TS widget with each backend option (first one using the matplotlib backend, the second one using the plotly backend).
16		-
17		-(% style="text-align:center" %)
18		-[[image:matplotlib.png]]
19		-
20		-(% style="text-align:center" %)
21		-[[image:plotly.png]]
22		-
23	23	== Inputs ==
24	24
25	25	Time series can be given as inputs in two forms:
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37	37
38	38	== Requirements and installation ==
39	39
40		-
41	41	Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and Jupyter extensions should be installed:
42	42
43	43	* **Libraries:**
44		-** [[mne>>https://mne.tools/stable/index.html]] >= 1.0
45		-** [[matplotlib>>https://matplotlib.org/3.5.0/index.html]]
46		-** [[plotly>>https://plotly.com/python/]] == 5.14.0
47		-** [[ipywidgets>>https://ipywidgets.readthedocs.io/en/7.x/]] == 7.7.2
48		-** [[ipympl>>https://github.com/matplotlib/ipympl#installation]] >= 0.8.5
	29	+** [[mne>>https://mne.tools/0.24/install/index.html]] version 0.24
	30	+** [[ipympl>>https://github.com/matplotlib/ipympl#installation]]
49	49	* (((
50	50	**Extensions:**
51	51
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54	54	jupyter labextension install @jupyter-widgets/jupyterlab-manager
55	55
56	56	jupyter labextension install jupyter-matplotlib
57		-
58		-jupyter labextension install jupyterlab-plotly
59	59	)))
60	60	)))
61	61
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99	99	)))
100	100
101	101	{{html}}
102		-<iframe width="840" height="480" src="https://www.youtube.com/embed/VmueiXMxbVk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
	82	+<iframe src="https://drive.google.com/file/d/1g4ryY1VIFMUD14Mb6Dq_KVb0b2_XU4VX/preview" width="840" height="480" allow="autoplay"></iframe>
103	103	{{/html}}

matplotlib.png

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1		-XWiki.rominabaila

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plotly.png

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1		-XWiki.rominabaila

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