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Changes for page Widget TimeSeries

Last modified by ldomide on 2023/05/23 14:34

From version 5.1
edited by rominabaila
on 2022/04/12 09:11
Change comment: There is no comment for this version
To version 13.1
edited by rominabaila
on 2022/04/12 09:44
Change comment: There is no comment for this version

Summary

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5 5  
6 6  == Inputs ==
7 7  
8 -The inputs
8 +It supports time series inputs of two types:
9 +
10 +* TVB TimeSeries datatype
11 +* Numpy arrays
12 +
13 +The widget supports 2-, 3-, and 4-dimensional arrays. In all three cases, there is a fixed shape that the TimeSeries widget expects:
14 +
15 +* for **2D**: (no_timepoints, no_channels)
16 +* for **3D**: (no_timepoints, state_variable/mode, no_channels)
17 +* for **4D**: (no_timepoints, state_variable, no_channels, mode)
18 +
19 +~* Note that the TVB TimeSeries datatype is always is always 4D and already has the expected shape.
20 +
21 +
22 +== Requirements and installation ==
23 +
24 +Before installing the tvb-widgets library containing the TimeSeries widget, the following python libraries and  Jupyter Notebook extensions should be installed:
25 +
26 +* **Libraries:**
27 +** [[ipympl>>https://github.com/matplotlib/ipympl#installation]]
28 +* (((
29 +**Extensions:**
30 +
31 +(% class="box" %)
32 +(((
33 +jupyter labextension install @jupyter-widgets/jupyterlab-manager
34 +
35 +jupyter labextension install jupyter-matplotlib
36 +)))
37 +)))
38 +
39 +Then, to install the tvb-widgets library, just type:
40 +
41 +(% class="box" %)
42 +(((
43 +pip install tvb-widgets
44 +)))
45 +
46 +
47 +== API usage ==
48 +
49 +First, the correct matplotlib backend must be set, which enables the interaction with the TimeSeries widget, by running the following command:
50 +
51 +(% class="box" %)
52 +(((
53 +%matplotlib widget
54 +)))
55 +
56 + Then, the TimeSeries widget (from the tvb-widgets API) and the display function should be imported:
57 +
58 +(% class="box" %)
59 +(((
60 +from tvbwidgets.api import TimeSeriesWidget
61 +from IPython.core.display_functions import display
62 +)))
63 +
64 +Assuming that the user has already created or imported a valid input, this is how the widget can be initialized and how an input can be assigned to it, using the //**add_datatype** //method (example below assumes that **//tsr//  **is a TVB TimeSeries datatype):
65 +
66 +(% class="box" %)
67 +(((
68 +tsw = TimeSeriesWidget()
69 +tsw.add_datatype(tsr)
70 +)))
71 +
72 +Finally, to display and interact with the TimeSeries widget, the **//get_widget//**// //method is used inside the //**display **//function:
73 +
74 +(% class="box" %)
75 +(((
76 +display(tsw.get_widget())
77 +)))
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1 +XWiki.rominabaila
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1 +XWiki.rominabaila
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TVB Widgets