Changes for page User Story: TVB

Last modified by ldomide on 2024/05/20 08:51
From version 23.1
edited by michaels
on 2020/06/26 12:04
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To version 18.1
edited by michaels
on 2020/05/12 10:23
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Summary

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5 -= From MRI to personalized brain simulation using TVB-EBRAINS integrated workflows =
5 += From MRI to personalized brain simulation =
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7 7  Here we explain step by step how to use The Virtual Brain (TVB) tools for end-to-end personalized brain simulation. We start by finding shared MRI data using KnowledgeGraph, create a brain model from extracted connectomes using TVB pipeline, and simulate neural activity using TVB brain network model simulators. We will use Jupyter notebooks on EBRAINS Collab platforms for frontend operations and supercomputers in the backend for intensive number crunching.
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9 -Overview video: [[https:~~/~~/youtu.be/_G_DjRb1ams>>https://youtu.be/_G_DjRb1ams||rel="noopener noreferrer" target="_blank"]]
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11 11  [[image:export_overview_new2.png]]
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120 120  TVB EduPack provides didactic use cases for The Virtual Brain. Typically a use case consists of a jupyter notebook and a didactic video. EduPack use cases help the user to reproduce TVB based publications or to get started quickly with TVB. EduCases demonstrate for example how to use TVB via the Collaboratory of the Human Brain Project, how to run multi-scale co-simulations with other simulators such as NEST, how to process imaging data to construct personalized virtual brains of healthy individuals and patients.
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122 -[[https:~~/~~/training.incf.org/studytrack/virtual-brain-simulation-platform>>https://training.incf.org/studytrack/virtual-brain-simulation-platform||rel="noopener noreferrer" target="_blank"]]
120 +[[https:~~/~~/training.incf.org/course/virtual-brain-education-pack-tvb-edupack>>url:https://training.incf.org/course/virtual-brain-education-pack-tvb-edupack||rel="noopener noreferrer" target="_blank"]]
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125 125  )))
Collaboratory.Apps.Collab.Code.CollabClass[0]
Description
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1 -TVB User Story: From MRI to personalized brain simulation using TVB-EBRAINS integrated workflows. Here we explain step by step how to use The Virtual Brain (TVB) tools for end-to-end personalized brain simulation.