Changes for page User Story: TVB

Last modified by ldomide on 2024/05/20 08:51
From version 28.1
edited by michaels
on 2020/08/03 11:22
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To version 27.1
edited by evanhancock
on 2020/07/28 18:05
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46 46  == The Virtual Brain: Simulate brain activity ==
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48 -The Virtual Brain is the main TVB software package. It is a neuroinformatics platform that provides an ecosystem of tools for simulating and analysing large-scale brain network dynamics based on biologically realistic connectivity. TVB can be operated via GUI and programmatic Python interface. On the EBRAINS Collaboratory Platform TVB Simulator usage is introduced through IPython Notebooks in the main TVB [[collab>>doc:Collabs.the-virtual-brain.WebHome||target="_blank"]]. Additionally, the TVB GUI can be directly accessed as [[a Web App>>https://thevirtualbrain.apps.hbp.eu/user/profile]]. Via the Web App users can configure simulations that are – depending on their complexity – either simulated directly on the web server or on a supercomputer, thereby making resource-consuming TVB functionality accessible to researchers that do not have access to supercomputers. Compiled standalone versions of the main software package can be downloaded from thevirtualbrain.org. In the following we take you through the main steps of brain network model simulation.
48 +The Virtual Brain is the main TVB software package. It is a neuroinformatics platform that provides an ecosystem of tools for simulating and analysing large-scale brain network dynamics based on biologically realistic connectivity. TVB can be operated via GUI and programmatic Python interface. On the HBP Collaboratory Platform TVB Simulator usage is introduced through IPython Notebooks. Additionally, the TVB GUI can be directly accessed as [[a Web App>>https://thevirtualbrain.apps.hbp.eu/user/profile]]. Via the Web App users can configure simulations that are – depending on their complexity – either simulated directly on the web server or on a supercomputer, thereby making resource-consuming TVB functionality accessible to researchers that do not have access to supercomputers. Compiled standalone versions of the main software package can be downloaded from thevirtualbrain.org. In the following we take you through the main steps of brain network model simulation.
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50 50  * Construct and downloaded the structural connectivity generated with the TVB pipeline. Alternatively, you can use demo SC that is shipped with the main TVB package. Next, go to the TVB Collaboratory and work through the example “[[Load TVB Connectivity>>https://collab.humanbrainproject.eu/#/collab/1609/nav/15645]]”
51 51  * Having loaded the SC, next work through the basic process of setting up a simulation, see