Molecular Tools: protein association rates and binding sites

Last modified by richtesn on 2022/05/23 22:36

Molecular Tools:
protein association rates and binding sites

This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates 

Authors: Neil Bruce, Daria Kokh, Stefan Richter, Rebecca Wade

What can I find here?

The descriptions of 

  • Tools and tutorials that describes how to:

    • simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
    • analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants
    • compute protein electrostatic potential (under development)

    • compare the electrostatic potentials surrounding a set of protein  isoforms or specific regions with multipipsa (under development)

    • identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development)

Who has access?

All EBRAINS users

Contents