Changes for page Molecular Tools: protein association rates and binding sites
Last modified by richtesn on 2022/05/23 22:36
Summary
-
Page properties (2 modified, 0 added, 0 removed)
-
Objects (0 modified, 1 added, 1 removed)
Details
- Page properties
-
- Author
-
... ... @@ -1,1 +1,1 @@ 1 -XWiki. dariak1 +XWiki.richtesn - Content
-
... ... @@ -4,6 +4,8 @@ 4 4 ((( 5 5 = Molecular Tools: protein association rates and binding sites = 6 6 7 +This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates 8 + 7 7 Authors: Stefan Richter 8 8 ))) 9 9 ))) ... ... @@ -14,8 +14,18 @@ 14 14 ((( 15 15 = What can I find here? = 16 16 19 +Please note, the corresponding usecases as jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here: 20 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]] 21 + 22 +The corresponding guidebooks can be found here: 23 +[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/18580>>https://collab.humanbrainproject.eu/#/collab/1655/nav/18580]] 24 + 25 +The descriptions of 26 + 17 17 * ((( 18 -Tools and tutorials that describes how to:* simulate protein-protein association using Brownian Dynamics (BD) simulations (web server webSDA) 28 +Tools and tutorials that describes how to: 29 + 30 +* simulate protein-protein association using Brownian Dynamics (BD) simulations (web server webSDA) 19 19 * analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants 20 20 * compute protein electrostatic potential (under development) 21 21 * ((( ... ... @@ -22,7 +22,7 @@ 22 22 compare the electrostatic potentials surrounding a set of protein isoforms or specific regions with multipipsa (under development) 23 23 ))) 24 24 * ((( 25 -identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms 37 +identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development) 26 26 ))) 27 27 ))) 28 28
- XWiki.XWikiRights[3]
-
- Allow/Deny
-
... ... @@ -1,1 +1,0 @@ 1 -Allow - Levels
-
... ... @@ -1,1 +1,0 @@ 1 -view - Users
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.XWikiGuest
- XWiki.XWikiRights[5]
-
- Allow/Deny
-
... ... @@ -1,0 +1,1 @@ 1 +Allow - Levels
-
... ... @@ -1,0 +1,1 @@ 1 +view - Users
-
... ... @@ -1,0 +1,1 @@ 1 +XWiki.XWikiGuest