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1		-XWiki.richtesn
	1	+XWiki.dariak

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4	4	(((
5	5	= Molecular Tools: protein association rates and binding sites =
6	6
7		-This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates
8		-
9	9	Authors: Stefan Richter
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11	11	)))
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16	16	(((
17	17	= What can I find here? =
18	18
19		-Please note, the corresponding jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here:
20		-[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]]
21		-
22	22	* (((
23		-Tools and tutorials that describes how to:
24		-
25		-* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
	18	+Tools and tutorials that describes how to:* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
26	26	* analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants
27	27	* compute protein electrostatic potential (under development)
28	28	* (((
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29	29	compare the electrostatic potentials surrounding a set of protein  isoforms or specific regions with multipipsa (under development)
30	30	)))
31	31	* (((
32		-identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development)
	25	+identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms
33	33	)))
34	34	)))
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