Last modified by richtesn on 2022/05/23 22:36
From version 17.1
edited by richtesn
on 2020/12/16 13:11
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To version 10.1
edited by dariak
on 2020/09/25 09:47
Change comment: There is no comment for this version

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1 -XWiki.richtesn
1 +XWiki.dariak
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4 4  (((
5 5  = Molecular Tools: protein association rates and binding sites =
6 6  
7 -This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates
8 -
9 9  Authors: Stefan Richter
10 10  )))
11 11  )))
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16 16  (((
17 17  = What can I find here? =
18 18  
19 -Please note, the corresponding usecases as jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here: 
20 -[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]]
21 -
22 -The corresponding guidebooks can be found here:
23 -[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/18580>>https://collab.humanbrainproject.eu/#/collab/1655/nav/18580]]
24 -
25 -The descriptions of
26 -
27 27  * (((
28 -Tools and tutorials that describes how to:
29 -
30 -* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
18 +Tools and tutorials that describes how to:* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
31 31  * analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants
32 32  * compute protein electrostatic potential (under development)
33 33  * (((
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34 34  compare the electrostatic potentials surrounding a set of protein  isoforms or specific regions with multipipsa (under development)
35 35  )))
36 36  * (((
37 -identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development)
25 +identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms
38 38  )))
39 39  )))
40 40