Last modified by richtesn on 2022/05/23 22:36
From version 20.2
edited by richtesn
on 2021/06/14 10:56
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To version 2.1
edited by dariak
on 2020/09/23 22:02
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Title
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1 -Molecular Tools: protein association rates and binding sites
1 +Molecular Tools: computation of protein association rates and exploring binding sites
Author
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1 -XWiki.richtesn
1 +XWiki.dariak
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2 2  (((
3 3  (% class="container" %)
4 4  (((
5 -= Molecular Tools:
6 -protein association rates and binding sites =
5 += My Collab's Extended Title =
7 7  
8 -This collab contains a set of tools and tutorials for exploring protein binding properties based on their electrostatics and estimation of protein-protein association rates
9 -
10 -Authors: Neil Bruce, Daria Kokh, Stefan Richter, Rebecca Wade
7 +My collab's subtitle
11 11  )))
12 12  )))
13 13  
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17 17  (((
18 18  = What can I find here? =
19 19  
20 -Please note, the corresponding usecases as jupyter notebooks will be transferred from Collaboratory 1. So far they can be found here: 
21 -[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/362934>>https://collab.humanbrainproject.eu/#/collab/1655/nav/362934]]
17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
22 22  
23 -The corresponding guidebooks can be found here:
24 -[[https:~~/~~/collab.humanbrainproject.eu/#/collab/1655/nav/18580>>https://collab.humanbrainproject.eu/#/collab/1655/nav/18580]]
25 -
26 -The descriptions of
27 -
28 -* (((
29 -Tools and tutorials that describes how to:
30 -
31 -* simulate protein-protein association  using Brownian Dynamics (BD)  simulations (web server webSDA)
32 -* analyse the results of a Brownian dynamics simulation for calculating protein-protein association rate constants
33 -* compute protein electrostatic potential (under development)
34 -* (((
35 -compare the electrostatic potentials surrounding a set of protein  isoforms or specific regions with multipipsa (under development)
36 -)))
37 -* (((
38 -identify potential protein binding sites by comparing the electrostatic potentials of a set of protein isoforms (under development)
39 -)))
40 -)))
41 -
42 42  = Who has access? =
43 43  
44 -All EBRAINS users
23 +Describe the audience of this collab.
45 45  )))
46 46  
47 47  
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